Variant report

Variant	rs8017060
Chromosome Location	chr14:37540245-37540246
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37415215..37416720-chr14:37538798..37540996,2	K562	blood:
2	chr14:37538918..37541164-chr14:37542653..37544836,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10047907	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10047908	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10131531	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10133042	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10135756	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136755	0.82[EUR][1000 genomes]
rs10136870	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10137595	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10137611	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10148080	0.89[EUR][1000 genomes]
rs10148097	0.89[EUR][1000 genomes]
rs10148311	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10148351	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10148426	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11156932	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12433348	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12892728	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12894067	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12894251	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12897058	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1467484	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1467485	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1467486	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1467487	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1467488	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1467489	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1467490	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1467491	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1467492	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1467493	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1555333	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17106133	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1956422	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1956425	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2180600	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2415374	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2415375	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2415376	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2415377	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2415378	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28437272	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28466578	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34592617	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35844261	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36105433	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4328351	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4408459	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6571773	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6571774	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6571775	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571778	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571779	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6571780	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7142225	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs714268	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs714269	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7146275	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7149154	0.82[EUR][1000 genomes]
rs7149490	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7153530	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7160964	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7359049	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7359050	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8004339	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8005022	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8008912	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8009178	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011715	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014426	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014914	0.83[EUR][1000 genomes]
rs8016428	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8022248	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9888610	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9919903	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1036201	chr14:37498841-37542041	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037719	chr14:37498841-37546359	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1048854	chr14:37505438-37546359	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37539800-37540800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr14:37540000-37540400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr14:37540000-37540800	Enhancers	NH-A	brain
4	chr14:37540200-37541000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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