Variant report

Variant	rs8019166
Chromosome Location	chr14:70239926-70239927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70206409..70208457-chr14:70238342..70240057,3	MCF-7	breast:
2	chr14:70194965..70197574-chr14:70237886..70240274,2	MCF-7	breast:
3	chr14:70184516..70187049-chr14:70238294..70240182,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10130174	0.91[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10145643	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10498531	0.85[GIH][hapmap]
rs11623504	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11626135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626930	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628140	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11628646	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs11628755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11629222	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12431918	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs12434311	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12434937	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436240	1.00[CHB][hapmap]
rs17107282	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28488181	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28595072	0.97[EUR][1000 genomes]
rs2877596	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4340264	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4341691	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs45527638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56063215	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56154784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982072	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs61982074	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61982101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982104	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61982105	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982106	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61982107	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7159823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72725721	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725750	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8013586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014462	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8018389	0.97[EUR][1000 genomes]
rs8020042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943276	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.94[TSI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943277	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70235400-70241200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:70235400-70248200	Strong transcription	Fetal Muscle Trunk	muscle
3	chr14:70235600-70244600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:70235600-70246200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:70235600-70247000	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr14:70235800-70240200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
7	chr14:70235800-70240600	Genic enhancers	Liver	Liver
8	chr14:70235800-70241200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr14:70235800-70241400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:70235800-70244200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr14:70235800-70244400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
12	chr14:70235800-70246200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr14:70235800-70246400	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr14:70235800-70246600	Strong transcription	HSMMtube	muscle
15	chr14:70235800-70246800	Strong transcription	Primary hematopoietic stem cells	blood
16	chr14:70235800-70248800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr14:70235800-70249200	Strong transcription	HSMM	muscle
18	chr14:70236000-70240400	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr14:70236000-70242000	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr14:70236000-70245400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr14:70236000-70247000	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr14:70236000-70247600	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr14:70236000-70248800	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr14:70236400-70242400	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr14:70236400-70246400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr14:70236400-70248800	Strong transcription	Primary B cells from cord blood	blood
27	chr14:70236600-70241000	Strong transcription	H9 Cell Line	embryonic stem cell
28	chr14:70236600-70241000	Strong transcription	K562	blood
29	chr14:70236600-70241000	Strong transcription	NHEK	skin
30	chr14:70236600-70241200	Strong transcription	Colonic Mucosa	Colon
31	chr14:70236600-70241400	Strong transcription	Brain Germinal Matrix	brain
32	chr14:70236600-70241800	Strong transcription	Aorta	Aorta
33	chr14:70236600-70244800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr14:70236600-70246000	Strong transcription	H1 Cell Line	embryonic stem cell
35	chr14:70236600-70247200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr14:70236600-70248200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr14:70236600-70248200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr14:70236600-70248200	Strong transcription	HMEC	breast
39	chr14:70236600-70248400	Strong transcription	Fetal Lung	lung
40	chr14:70236600-70249400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr14:70236800-70240600	Strong transcription	Hela-S3	cervix
42	chr14:70236800-70241000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr14:70236800-70241800	Strong transcription	Spleen	Spleen
44	chr14:70236800-70242800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr14:70236800-70242800	Strong transcription	Fetal Thymus	thymus
46	chr14:70236800-70245400	Strong transcription	NHDF-Ad	bronchial
47	chr14:70236800-70246200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr14:70236800-70246200	Strong transcription	Fetal Muscle Leg	muscle
49	chr14:70236800-70246400	Strong transcription	Fetal Stomach	stomach
50	chr14:70236800-70246600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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