Variant report

Variant	rs8020153
Chromosome Location	chr14:37553160-37553161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37543104..37544844-chr14:37552130..37554512,2	MCF-7	breast:
2	chr14:37548451..37550680-chr14:37552650..37555387,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1012199	0.82[ASN][1000 genomes]
rs10129152	0.81[ASN][1000 genomes]
rs10132328	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133673	0.91[ASN][1000 genomes]
rs10136238	0.91[ASN][1000 genomes]
rs10141752	1.00[CEU][hapmap];0.91[ASN][1000 genomes]
rs10142021	0.91[ASN][1000 genomes]
rs10148774	0.91[EUR][1000 genomes]
rs10151092	0.81[ASN][1000 genomes]
rs10220281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10220604	0.92[ASN][1000 genomes]
rs10459480	0.81[ASN][1000 genomes]
rs10483485	0.91[ASN][1000 genomes]
rs12050169	0.97[ASN][1000 genomes]
rs12050463	0.99[ASN][1000 genomes]
rs12717260	0.93[EUR][1000 genomes]
rs12889634	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106189	0.91[ASN][1000 genomes]
rs17106209	0.91[ASN][1000 genomes]
rs17106216	0.91[ASN][1000 genomes]
rs17106275	1.00[ASN][1000 genomes]
rs17106290	1.00[ASN][1000 genomes]
rs17106291	1.00[ASN][1000 genomes]
rs17106333	0.82[ASN][1000 genomes]
rs17106404	0.82[ASN][1000 genomes]
rs17106433	0.82[ASN][1000 genomes]
rs17841015	0.91[ASN][1000 genomes]
rs17841017	0.81[ASN][1000 genomes]
rs1884220	1.00[ASN][1000 genomes]
rs1884221	0.97[ASN][1000 genomes]
rs1884775	0.91[ASN][1000 genomes]
rs1884777	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[LWK][hapmap];0.97[MKK][hapmap];0.91[TSI][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950374	0.81[ASN][1000 genomes]
rs1950375	0.81[ASN][1000 genomes]
rs1950376	1.00[ASN][1000 genomes]
rs1950377	1.00[CEU][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs1950814	0.91[ASN][1000 genomes]
rs1955760	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1955761	0.82[ASN][1000 genomes]
rs1955762	0.82[ASN][1000 genomes]
rs1955763	0.81[ASN][1000 genomes]
rs1956423	0.91[ASN][1000 genomes]
rs1956424	0.91[ASN][1000 genomes]
rs1971451	0.81[ASN][1000 genomes]
rs1998121	0.91[ASN][1000 genomes]
rs2057171	1.00[CEU][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2078246	0.81[ASN][1000 genomes]
rs2415379	0.94[ASN][1000 genomes]
rs2415380	0.94[ASN][1000 genomes]
rs2415384	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2415388	0.81[ASN][1000 genomes]
rs28517624	0.91[ASN][1000 genomes]
rs28593311	0.85[ASN][1000 genomes]
rs4356385	0.95[ASN][1000 genomes]
rs4363773	1.00[CEU][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs61293305	0.81[ASN][1000 genomes]
rs6571782	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7140385	0.81[TSI][hapmap]
rs7140991	0.97[ASN][1000 genomes]
rs7160129	0.81[ASN][1000 genomes]
rs74045463	0.90[ASN][1000 genomes]
rs74045478	1.00[ASN][1000 genomes]
rs8008478	1.00[ASN][1000 genomes]
rs8014186	1.00[CEU][hapmap];0.83[GIH][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8019489	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv275403	chr14:37551041-37556357	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37552600-37553600	Flanking Active TSS	K562	blood
2	chr14:37552800-37553400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:37552800-37553600	Enhancers	Pancreas	Pancrea

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