Variant report

Variant	rs8021330
Chromosome Location	chr14:106002352-106002353
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:105952168..105953767-chr14:106000836..106002461,2	MCF-7	breast:
2	chr14:105946608..105948237-chr14:106000945..106003342,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213145	Chromatin interaction
ENSG00000257341	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10133083	0.85[EUR][1000 genomes]
rs10136015	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10139300	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10139744	0.85[EUR][1000 genomes]
rs10147392	0.90[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10151805	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10152050	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11622603	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11624007	0.93[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11628497	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12100587	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12101234	0.89[ASN][1000 genomes]
rs12717698	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12884681	0.80[CHB][hapmap]
rs12893999	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13379293	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28402171	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28431397	0.85[EUR][1000 genomes]
rs28620005	0.91[ASN][1000 genomes]
rs28662250	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28733392	0.98[EUR][1000 genomes]
rs35240373	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35471125	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35590487	0.95[EUR][1000 genomes]
rs35592422	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35723046	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35921705	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4074453	0.96[GIH][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4074937	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4075104	0.96[GIH][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4075105	0.96[GIH][hapmap];1.00[MEX][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55958808	0.85[EUR][1000 genomes]
rs56057552	0.93[ASN][1000 genomes]
rs56142547	0.82[ASN][1000 genomes]
rs58087925	0.85[EUR][1000 genomes]
rs66710832	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7141834	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7160747	0.92[GIH][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72713323	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73373742	0.90[ASN][1000 genomes]
rs8003942	0.90[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8004007	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8005568	0.90[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8013055	0.95[EUR][1000 genomes]
rs8013827	0.90[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.94[MEX][hapmap];0.90[ASN][1000 genomes]
rs8014713	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8014913	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105995400-106004200	Weak transcription	Brain Substantia Nigra	brain
2	chr14:105996000-106004000	Weak transcription	Pancreas	Pancrea
3	chr14:105996200-106004400	Weak transcription	Right Atrium	heart
4	chr14:105996600-106004400	Weak transcription	Liver	Liver
5	chr14:105996800-106004000	Weak transcription	Fetal Brain Male	brain
6	chr14:105997400-106004200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:105998200-106004400	Weak transcription	Brain Germinal Matrix	brain
8	chr14:105999600-106004400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr14:105999800-106003200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr14:106000200-106004000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr14:106000200-106004000	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links