Variant report

Variant	rs8022603
Chromosome Location	chr14:85725689-85725690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10134214	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10220585	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10498582	1.00[EUR][1000 genomes]
rs12050312	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs12435232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12435282	0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12435574	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12879855	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1375575	1.00[EUR][1000 genomes]
rs17796669	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1839313	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1867082	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs2029135	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2053514	0.84[EUR][1000 genomes]
rs2372886	1.00[EUR][1000 genomes]
rs34155469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34235559	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34662815	0.83[EUR][1000 genomes]
rs35048084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4904242	0.82[EUR][1000 genomes]
rs7151509	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7160419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8011992	1.00[EUR][1000 genomes]
rs8012486	0.85[EUR][1000 genomes]
rs8022384	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961166	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422273	chr14:85703149-85767292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85717200-85727800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links