Variant report

Variant	rs8022664
Chromosome Location	chr14:55485615-55485616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55482996..55488151-chr14:55490910..55495295,9	MCF-7	breast:
2	chr14:55477843..55481656-chr14:55484735..55486972,4	K562	blood:
3	chr14:55483185..55488779-chr14:55516333..55520140,7	MCF-7	breast:
4	chr14:55485449..55489324-chr14:55491150..55494608,6	K562	blood:

Variant related genes	Relation type
ENSG00000198554	Chromatin interaction
ENSG00000180008	Chromatin interaction
ENSG00000168175	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17128093	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17128105	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17128117	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17128119	0.85[AMR][1000 genomes]
rs61744418	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61747434	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6572996	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7145818	0.85[AFR][1000 genomes]
rs7161667	0.83[AMR][1000 genomes]
rs8019354	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55418600-55492200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:55421800-55492800	Weak transcription	Aorta	Aorta
3	chr14:55422400-55492400	Weak transcription	Fetal Kidney	kidney
4	chr14:55429000-55492400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr14:55434000-55492800	Weak transcription	Primary B cells from cord blood	blood
6	chr14:55434200-55486800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr14:55438600-55490200	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr14:55439400-55490200	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr14:55442200-55492800	Weak transcription	Fetal Intestine Large	intestine
10	chr14:55443400-55492200	Weak transcription	NHLF	lung
11	chr14:55454200-55492400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr14:55455800-55486600	Weak transcription	HepG2	liver
13	chr14:55458400-55492200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr14:55458400-55492200	Weak transcription	NH-A	brain
15	chr14:55464400-55486800	Weak transcription	Fetal Heart	heart
16	chr14:55467800-55486800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:55468600-55492400	Weak transcription	Osteobl	bone
18	chr14:55468800-55492200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:55472000-55493400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr14:55472200-55486600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr14:55472200-55491000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr14:55472400-55489800	Weak transcription	NHEK	skin
23	chr14:55472400-55492000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr14:55472400-55492400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr14:55472400-55492400	Weak transcription	Thymus	Thymus
26	chr14:55472400-55492800	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr14:55472600-55492000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr14:55472600-55492200	Weak transcription	Primary T cells from cord blood	blood
29	chr14:55472800-55491000	Weak transcription	Fetal Intestine Small	intestine
30	chr14:55472800-55492200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr14:55473000-55493400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr14:55475000-55492600	Weak transcription	Fetal Muscle Trunk	muscle
33	chr14:55475200-55486800	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr14:55475400-55488000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr14:55475400-55492200	Weak transcription	NHDF-Ad	bronchial
36	chr14:55475600-55490800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr14:55476800-55488000	Weak transcription	Fetal Stomach	stomach
38	chr14:55477800-55492200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr14:55477800-55492200	Weak transcription	Fetal Lung	lung
40	chr14:55477800-55492400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr14:55477800-55492400	Weak transcription	Fetal Muscle Leg	muscle
42	chr14:55478000-55486600	Weak transcription	GM12878-XiMat	blood
43	chr14:55478000-55487600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr14:55478000-55492200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr14:55479600-55486200	Weak transcription	Fetal Thymus	thymus
46	chr14:55479600-55490800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr14:55479800-55490200	Weak transcription	K562	blood
48	chr14:55480400-55488200	Weak transcription	A549	lung
49	chr14:55480400-55491400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:55480400-55492200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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