Variant report

Variant	rs8024724
Chromosome Location	chr15:77915141-77915142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77908642..77910166-chr15:77913466..77916078,2	MCF-7	breast:
2	chr15:77910678..77912184-chr15:77913729..77916491,2	K562	blood:
3	chr15:77899424..77903075-chr15:77914224..77917029,3	K562	blood:
4	chr15:77914149..77916308-chr15:77924706..77928393,3	MCF-7	breast:
5	chr15:77914562..77916092-chr15:77921484..77924358,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169783	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1007538	1.00[ASN][1000 genomes]
rs11630768	0.92[CHB][hapmap]
rs11633639	0.91[CHB][hapmap]
rs11635239	0.92[CHB][hapmap]
rs11852680	0.97[ASN][1000 genomes]
rs11854903	0.90[ASN][1000 genomes]
rs11855155	0.91[CHB][hapmap]
rs11856978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11856998	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11857045	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13329256	0.91[CHB][hapmap]
rs16969013	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16969027	0.91[CHB][hapmap]
rs1877292	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1877293	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1877294	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1877295	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1877298	0.91[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs1995972	0.90[ASN][1000 genomes]
rs2292415	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2292416	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2292417	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs28501538	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28575171	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs28575624	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28649029	0.97[ASN][1000 genomes]
rs28654794	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28661259	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28674549	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28684542	0.97[ASN][1000 genomes]
rs28702901	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28720884	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28733160	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3942665	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4886888	0.81[CHB][hapmap]
rs56037535	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56209055	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56929920	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57354334	0.97[ASN][1000 genomes]
rs60677748	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61079432	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7165679	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7171716	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7182167	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs74025322	0.99[ASN][1000 genomes]
rs74025324	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs74025331	0.91[ASN][1000 genomes]
rs8023571	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8024932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026164	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8027456	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8027963	0.96[ASN][1000 genomes]
rs8028788	0.91[CHB][hapmap]
rs9806280	0.92[CHB][hapmap]
rs9920101	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9920113	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9920127	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9920132	0.92[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs9920134	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9920869	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9972481	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv904415	chr15:77845959-77943935	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv904416	chr15:77845959-77967416	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv904417	chr15:77851535-77935992	Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv904418	chr15:77851535-77963887	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv904419	chr15:77897197-77943935	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv3406226	chr15:77914297-77918495	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77904200-77915400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr15:77908000-77918800	Weak transcription	Brain Germinal Matrix	brain
3	chr15:77910400-77923400	Weak transcription	Pancreas	Pancrea
4	chr15:77910600-77916800	Weak transcription	Fetal Brain Female	brain
5	chr15:77911600-77916600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:77912200-77920200	Enhancers	Brain Angular Gyrus	brain
7	chr15:77912600-77916200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:77912600-77916600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr15:77913600-77923000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr15:77913800-77917200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:77913800-77918000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:77914000-77916200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:77914000-77916200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
14	chr15:77914000-77916600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:77914000-77916800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:77914000-77916800	Enhancers	Fetal Muscle Trunk	muscle
17	chr15:77914000-77917200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr15:77914000-77917200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr15:77914000-77918000	Enhancers	Fetal Lung	lung
20	chr15:77914000-77918400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr15:77914200-77915200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:77914200-77915200	Enhancers	Right Ventricle	heart
23	chr15:77914200-77916000	Enhancers	Fetal Muscle Leg	muscle
24	chr15:77914200-77916600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr15:77914200-77917800	Enhancers	Fetal Heart	heart
26	chr15:77914200-77918000	Enhancers	Brain Hippocampus Middle	brain
27	chr15:77914200-77918000	Enhancers	Fetal Stomach	stomach
28	chr15:77914200-77919000	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr15:77914200-77920400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:77914400-77915400	Enhancers	Brain Substantia Nigra	brain
31	chr15:77914400-77915400	Flanking Bivalent TSS/Enh	HepG2	liver
32	chr15:77914400-77916800	Enhancers	Brain Anterior Caudate	brain
33	chr15:77914400-77917200	Enhancers	Spleen	Spleen
34	chr15:77914400-77917800	Enhancers	Brain Cingulate Gyrus	brain
35	chr15:77914400-77923200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr15:77914600-77915200	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr15:77914600-77916400	Flanking Active TSS	K562	blood
38	chr15:77914800-77915400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr15:77914800-77915400	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr15:77914800-77915400	Enhancers	Right Atrium	heart
41	chr15:77914800-77915600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr15:77914800-77915800	Enhancers	Fetal Intestine Small	intestine
43	chr15:77914800-77916600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr15:77914800-77916800	Enhancers	H9 Cell Line	embryonic stem cell
45	chr15:77914800-77921600	Enhancers	Fetal Brain Male	brain
46	chr15:77915000-77915200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
47	chr15:77915000-77915400	Bivalent Enhancer	Placenta	Placenta

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