Variant report

Variant	rs8024939
Chromosome Location	chr15:79049237-79049238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:79047462..79049976-chr15:79054585..79057196,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11072800	0.85[ASN][1000 genomes]
rs11632672	0.84[CHB][hapmap];0.85[ASN][1000 genomes]
rs12148817	0.84[ASN][1000 genomes]
rs12439049	0.91[EUR][1000 genomes]
rs12906835	0.85[ASN][1000 genomes]
rs12909668	0.88[CHB][hapmap]
rs2291196	0.93[EUR][1000 genomes]
rs2622821	0.84[ASN][1000 genomes]
rs3743065	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3743068	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3861181	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4887091	0.81[CEU][hapmap];0.89[CHB][hapmap];0.85[ASN][1000 genomes]
rs4887092	0.85[ASN][1000 genomes]
rs57224848	0.97[EUR][1000 genomes]
rs59888683	0.96[EUR][1000 genomes]
rs59934757	0.96[EUR][1000 genomes]
rs7176492	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7177143	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7182567	0.85[CEU][hapmap];0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs7182694	0.85[ASN][1000 genomes]
rs7182993	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79040600-79060000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:79042800-79055400	Enhancers	Right Ventricle	heart
3	chr15:79043400-79049400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:79043400-79049600	Weak transcription	Pancreas	Pancrea
5	chr15:79043600-79049600	Weak transcription	Colonic Mucosa	Colon
6	chr15:79043600-79049800	Weak transcription	Fetal Brain Female	brain
7	chr15:79043600-79077800	Weak transcription	Brain Germinal Matrix	brain
8	chr15:79043800-79049600	Weak transcription	Lung	lung
9	chr15:79043800-79052000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr15:79043800-79053400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr15:79044000-79049600	Weak transcription	Stomach Mucosa	stomach
12	chr15:79044000-79050000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr15:79044000-79052600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr15:79044200-79059000	Enhancers	Fetal Muscle Trunk	muscle
15	chr15:79044400-79049400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr15:79045000-79055800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:79045000-79059000	Enhancers	Fetal Muscle Leg	muscle
18	chr15:79045600-79049400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:79046200-79054600	Enhancers	Fetal Heart	heart
20	chr15:79046400-79063200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:79046600-79049400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:79046800-79050200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:79047000-79053200	Enhancers	Stomach Smooth Muscle	stomach
24	chr15:79047200-79053600	Enhancers	NHDF-Ad	bronchial
25	chr15:79047200-79054600	Enhancers	HSMMtube	muscle
26	chr15:79047400-79049400	Weak transcription	Ovary	ovary
27	chr15:79047600-79049600	Weak transcription	Fetal Lung	lung
28	chr15:79048000-79050200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:79048000-79050200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr15:79048000-79050200	Enhancers	HMEC	breast
31	chr15:79048200-79049600	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:79048200-79050200	Enhancers	NH-A	brain
33	chr15:79048200-79050400	Enhancers	Adipose Nuclei	Adipose
34	chr15:79048200-79051200	Enhancers	HUVEC	blood vessel
35	chr15:79048200-79055200	Enhancers	Primary B cells from cord blood	blood
36	chr15:79048200-79057000	Enhancers	Primary B cells from peripheral blood	blood
37	chr15:79048400-79049400	Enhancers	NHEK	skin
38	chr15:79048400-79050000	Enhancers	Aorta	Aorta
39	chr15:79048400-79050000	Enhancers	Brain Hippocampus Middle	brain
40	chr15:79048600-79049400	Enhancers	GM12878-XiMat	blood
41	chr15:79048600-79050000	Enhancers	Brain Angular Gyrus	brain
42	chr15:79048600-79050200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr15:79048600-79050200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr15:79048600-79054600	Enhancers	Placenta	Placenta
45	chr15:79048600-79055000	Enhancers	Left Ventricle	heart
46	chr15:79048800-79049600	Weak transcription	Brain Anterior Caudate	brain
47	chr15:79048800-79051600	Weak transcription	Psoas Muscle	Psoas
48	chr15:79049000-79049400	Weak transcription	Esophagus	oesophagus
49	chr15:79049200-79049400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:79049200-79049400	Enhancers	Brain Substantia Nigra	brain

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