Variant report

Variant	rs8025472
Chromosome Location	chr15:78161914-78161915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10152449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10152492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10468064	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28405381	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28485423	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28494785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28679863	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28708510	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28715078	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35596151	1.00[ASN][1000 genomes]
rs3890546	0.81[AFR][1000 genomes]
rs3901402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56009211	1.00[ASN][1000 genomes]
rs56155915	1.00[ASN][1000 genomes]
rs58596982	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59237872	1.00[ASN][1000 genomes]
rs59860550	1.00[ASN][1000 genomes]
rs61246633	1.00[ASN][1000 genomes]
rs6495255	0.95[AFR][1000 genomes]
rs72730742	1.00[ASN][1000 genomes]
rs72730745	1.00[ASN][1000 genomes]
rs72730747	1.00[ASN][1000 genomes]
rs72730748	1.00[ASN][1000 genomes]
rs72730751	1.00[ASN][1000 genomes]
rs72730780	0.80[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72730781	0.96[EUR][1000 genomes]
rs74026892	1.00[ASN][1000 genomes]
rs74026898	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74026900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74026901	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8025929	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026137	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026883	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8032467	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8034948	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv833062	chr15:78035206-78220358	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1833316	chr15:78081307-78328108	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv904426	chr15:78090630-78264164	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904427	chr15:78129964-78251431	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv976954	chr15:78153346-78255825	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1046383	chr15:78153850-78229596	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv904428	chr15:78156238-78230906	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv904429	chr15:78160362-78251431	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78155800-78163000	Weak transcription	Fetal Intestine Small	intestine
2	chr15:78157600-78162400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:78160400-78162800	Weak transcription	Pancreas	Pancrea
4	chr15:78161200-78162600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:78161200-78163000	Enhancers	Hela-S3	cervix
6	chr15:78161400-78162000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:78161400-78162000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:78161400-78162000	Enhancers	Placenta	Placenta
9	chr15:78161400-78162200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr15:78161400-78162200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr15:78161400-78162200	Enhancers	HSMMtube	muscle
12	chr15:78161400-78162400	Enhancers	HMEC	breast
13	chr15:78161400-78162800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:78161400-78162800	Enhancers	HUVEC	blood vessel
15	chr15:78161400-78163200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:78161400-78163200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:78161400-78163200	Enhancers	HSMM	muscle
18	chr15:78161400-78163400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:78161600-78162200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:78161600-78162200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
21	chr15:78161600-78162200	Enhancers	NH-A	brain
22	chr15:78161800-78162000	Enhancers	A549	lung
23	chr15:78161800-78162200	Enhancers	Osteobl	bone

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