Variant report

Variant	rs8025730
Chromosome Location	chr15:34453933-34453934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34446871..34449585-chr15:34452691..34454622,2	K562	blood:
2	chr15:34452687..34455262-chr15:34501996..34503726,2	K562	blood:

Variant related genes	Relation type
ENSG00000134152	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10775222	0.88[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs10851950	0.92[ASN][1000 genomes]
rs11072998	0.94[ASN][1000 genomes]
rs11635964	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs11636442	0.93[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs11852537	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11854686	0.90[YRI][hapmap];0.85[ASN][1000 genomes]
rs11857205	0.85[ASN][1000 genomes]
rs11857684	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12437551	0.86[CHB][hapmap]
rs12591181	0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs12594077	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16958829	0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16958835	0.93[YRI][hapmap];0.83[ASN][1000 genomes]
rs16958836	0.93[YRI][hapmap];0.83[ASN][1000 genomes]
rs16958848	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1836977	0.88[ASN][1000 genomes]
rs1836978	0.91[ASN][1000 genomes]
rs1978810	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.85[ASN][1000 genomes]
rs2339368	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2339369	0.94[ASN][1000 genomes]
rs28538047	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28652966	0.80[ASN][1000 genomes]
rs28768700	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28813796	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4780226	0.92[ASN][1000 genomes]
rs56731918	0.82[ASN][1000 genomes]
rs56936283	0.83[ASN][1000 genomes]
rs57530092	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57699120	0.82[ASN][1000 genomes]
rs57715967	0.85[ASN][1000 genomes]
rs58875083	0.82[ASN][1000 genomes]
rs59611916	0.83[ASN][1000 genomes]
rs59635553	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60749797	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6495558	0.85[ASN][1000 genomes]
rs6495580	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7166360	0.83[ASN][1000 genomes]
rs7172480	0.83[ASN][1000 genomes]
rs7172633	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7173244	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7174442	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7174586	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7175168	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7178002	0.96[YRI][hapmap]
rs7178203	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7178988	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.82[ASN][1000 genomes]
rs7181687	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.82[ASN][1000 genomes]
rs7181902	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.82[ASN][1000 genomes]
rs73376164	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73376168	0.83[ASN][1000 genomes]
rs73376178	0.85[ASN][1000 genomes]
rs73376181	0.85[ASN][1000 genomes]
rs73376192	0.85[ASN][1000 genomes]
rs73376193	0.85[ASN][1000 genomes]
rs73376196	0.85[ASN][1000 genomes]
rs73378126	0.82[ASN][1000 genomes]
rs73378128	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73378138	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73378141	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73378144	0.81[ASN][1000 genomes]
rs7497840	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7497951	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8025406	0.93[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs8026939	0.80[ASN][1000 genomes]
rs8027499	0.81[CHB][hapmap]
rs8027830	0.82[ASN][1000 genomes]
rs8028932	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8028950	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8031102	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8034315	0.82[ASN][1000 genomes]
rs8035493	0.88[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs8036468	0.86[CHB][hapmap]
rs8036791	0.82[ASN][1000 genomes]
rs8040732	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040861	0.96[ASN][1000 genomes]
rs8043216	0.87[CHB][hapmap]
rs9920654	0.92[ASN][1000 genomes]
rs9972505	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs8025730	C15orf29	cis	normal skin	skin_eQTL
rs8025730	NOP10	cis	Thyroid	GTEx

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34429800-34456800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr15:34439000-34454600	Weak transcription	Brain Angular Gyrus	brain
3	chr15:34443400-34456400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr15:34444000-34455400	Weak transcription	Brain Anterior Caudate	brain
5	chr15:34444400-34456400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr15:34445400-34459600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:34445800-34455600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:34445800-34459400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
9	chr15:34446200-34456000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:34448600-34454800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr15:34450200-34454600	Weak transcription	Fetal Brain Male	brain
12	chr15:34451400-34454400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:34451400-34455200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:34451400-34456400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:34451800-34455200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr15:34452000-34455600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:34452000-34457800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
18	chr15:34452200-34454000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr15:34452200-34454800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
20	chr15:34452200-34455000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
21	chr15:34452200-34455000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
22	chr15:34452200-34455000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
23	chr15:34452200-34455200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:34452200-34455200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:34452200-34455200	ZNF genes & repeats	Thymus	Thymus
26	chr15:34452200-34455200	ZNF genes & repeats	HMEC	breast
27	chr15:34452200-34456000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
28	chr15:34452200-34456600	ZNF genes & repeats	A549	lung
29	chr15:34452400-34455200	ZNF genes & repeats	Primary B cells from cord blood	blood
30	chr15:34452400-34455200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:34452400-34455200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr15:34452400-34455200	ZNF genes & repeats	Placenta	Placenta
33	chr15:34452600-34456200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
34	chr15:34452800-34454200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr15:34452800-34455000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
36	chr15:34452800-34455000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
37	chr15:34452800-34455000	ZNF genes & repeats	Liver	Liver
38	chr15:34452800-34455000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
39	chr15:34452800-34455200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr15:34452800-34455200	ZNF genes & repeats	Fetal Intestine Large	intestine
41	chr15:34452800-34455200	ZNF genes & repeats	GM12878-XiMat	blood
42	chr15:34452800-34455800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
43	chr15:34452800-34456600	ZNF genes & repeats	Dnd41	blood
44	chr15:34453000-34454000	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr15:34453000-34454000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr15:34453000-34454000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
47	chr15:34453000-34454000	ZNF genes & repeats	Aorta	Aorta
48	chr15:34453000-34454000	ZNF genes & repeats	Brain Germinal Matrix	brain
49	chr15:34453000-34454000	Strong transcription	Brain Hippocampus Middle	brain
50	chr15:34453000-34454000	ZNF genes & repeats	Fetal Thymus	thymus

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