Variant report

Variant	rs8026664
Chromosome Location	chr15:77179741-77179742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr15:77179710-77180240	HepG2	liver:	n/a	n/a
2	POLR2A	chr15:77179662-77179806	MCF-7	breast:	n/a	n/a
3	FOXA1	chr15:77179721-77180247	HepG2	liver:	n/a	n/a
4	FOXA1	chr15:77179671-77180384	HepG2	liver:	n/a	n/a
5	FOXA1	chr15:77179651-77180295	HepG2	liver:	n/a	n/a
6	POLR2A	chr15:77179663-77179881	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
SCAPER	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11072640	1.00[AMR][1000 genomes]
rs11853683	1.00[AMR][1000 genomes]
rs2469198	1.00[AMR][1000 genomes]
rs2469207	1.00[AMR][1000 genomes]
rs2469237	1.00[AMR][1000 genomes]
rs28391551	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28402797	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28412669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28421596	1.00[AMR][1000 genomes]
rs28508056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28641730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28644501	1.00[AMR][1000 genomes]
rs28744566	1.00[AMR][1000 genomes]
rs3099135	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3099141	0.80[AFR][1000 genomes]
rs3110376	1.00[AMR][1000 genomes]
rs3110377	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3110383	1.00[AMR][1000 genomes]
rs3110386	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4886833	1.00[AMR][1000 genomes]
rs7173333	1.00[AMR][1000 genomes]
rs7178723	1.00[AMR][1000 genomes]
rs8035685	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8038253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8038701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9920797	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv1803942	chr15:77151005-77210457	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
8	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77112200-77196000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr15:77133200-77196800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:77140800-77195800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr15:77142000-77195800	Weak transcription	Right Ventricle	heart
5	chr15:77146400-77196400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:77148600-77195600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr15:77148800-77181000	Weak transcription	Fetal Kidney	kidney
8	chr15:77148800-77195600	Weak transcription	Dnd41	blood
9	chr15:77158600-77179800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:77158600-77180600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr15:77158600-77190800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr15:77158800-77195600	Weak transcription	Brain Hippocampus Middle	brain
13	chr15:77158800-77195600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr15:77161400-77188800	Weak transcription	Fetal Heart	heart
15	chr15:77168400-77195000	Weak transcription	Adipose Nuclei	Adipose
16	chr15:77168600-77180000	Weak transcription	Esophagus	oesophagus
17	chr15:77168600-77180800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:77168600-77181600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:77168600-77195000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:77168600-77195600	Weak transcription	Colon Smooth Muscle	Colon
21	chr15:77168600-77196800	Weak transcription	Pancreas	Pancrea
22	chr15:77168600-77196800	Weak transcription	Spleen	Spleen
23	chr15:77170200-77190600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:77172200-77182400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:77172800-77195600	Weak transcription	HSMM	muscle
26	chr15:77173600-77179800	Weak transcription	Brain Substantia Nigra	brain
27	chr15:77173800-77183600	Weak transcription	Primary T cells from cord blood	blood
28	chr15:77175600-77196800	Weak transcription	Aorta	Aorta
29	chr15:77175600-77196800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr15:77175800-77195600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr15:77176000-77190800	Weak transcription	Fetal Intestine Large	intestine
32	chr15:77176000-77191000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr15:77176000-77192800	Weak transcription	Liver	Liver
34	chr15:77176000-77192800	Weak transcription	Left Ventricle	heart
35	chr15:77176000-77195800	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr15:77176000-77196800	Weak transcription	Ovary	ovary
37	chr15:77176200-77180200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr15:77176200-77180200	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr15:77176200-77190800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr15:77176200-77195400	Weak transcription	Primary B cells from cord blood	blood
41	chr15:77176200-77195800	Weak transcription	Primary B cells from peripheral blood	blood
42	chr15:77176400-77183800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr15:77176400-77195600	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr15:77178200-77185400	Weak transcription	Right Atrium	heart
45	chr15:77179000-77179800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
46	chr15:77179000-77180200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:77179200-77179800	ZNF genes & repeats	Fetal Brain Female	brain
48	chr15:77179200-77180200	ZNF genes & repeats	Fetal Intestine Small	intestine
49	chr15:77179400-77179800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr15:77179400-77180000	Flanking Active TSS	HepG2	liver

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