Variant report
Variant | rs8027120 |
---|---|
Chromosome Location | chr15:53323335-53323336 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12594246 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1392858 | 0.82[ASN][1000 genomes] |
rs1508045 | 0.84[ASN][1000 genomes] |
rs17659077 | 0.85[ASN][1000 genomes] |
rs17659107 | 0.82[ASN][1000 genomes] |
rs2047667 | 0.90[ASN][1000 genomes] |
rs2047668 | 0.90[ASN][1000 genomes] |
rs2414224 | 0.93[ASN][1000 genomes] |
rs2414227 | 0.82[ASN][1000 genomes] |
rs4142454 | 0.85[ASN][1000 genomes] |
rs7174447 | 0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs73402033 | 0.86[ASN][1000 genomes] |
rs73402040 | 0.85[ASN][1000 genomes] |
rs73402043 | 0.84[ASN][1000 genomes] |
rs73402051 | 0.83[ASN][1000 genomes] |
rs73402072 | 0.84[ASN][1000 genomes] |
rs8027138 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs8042629 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs958059 | 0.82[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv833007 | chr15:53264564-53453525 | Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
2 | nsv904221 | chr15:53279378-53434365 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | esv3343986 | chr15:53284440-53571936 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
4 | nsv569429 | chr15:53301023-53329302 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv904222 | chr15:53316487-53384700 | Enhancers Flanking Active TSS Weak transcription | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:53322800-53323400 | Flanking Active TSS | Liver | Liver |
2 | chr15:53322800-53326400 | Enhancers | HepG2 | liver |