Variant report

Variant	rs8028433
Chromosome Location	chr15:79171439-79171440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:79099510..79101479-chr15:79170931..79173380,2	K562	blood:
2	chr15:79169953..79171681-chr15:79182781..79184676,2	K562	blood:
3	chr15:79164114..79167612-chr15:79169909..79172320,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185787	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11853058	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11854790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11856993	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11857815	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11857844	0.86[AFR][1000 genomes]
rs11857964	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2082764	0.84[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2289693	0.92[AFR][1000 genomes]
rs2869820	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4283202	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60132959	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61433603	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6495350	0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7166142	0.96[AFR][1000 genomes]
rs7172767	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7180086	0.84[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74024489	1.00[AMR][1000 genomes]
rs74024491	1.00[AMR][1000 genomes]
rs74024492	1.00[AMR][1000 genomes]
rs8023320	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8025166	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8027614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8039160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs894785	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79166800-79173400	Enhancers	Fetal Heart	heart
2	chr15:79167000-79179200	Weak transcription	Esophagus	oesophagus
3	chr15:79167200-79172200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr15:79167200-79178200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:79167400-79171600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:79167400-79171800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr15:79167600-79172200	Enhancers	Fetal Muscle Leg	muscle
8	chr15:79167800-79172400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:79167800-79173200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr15:79167800-79183800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:79168000-79172400	Enhancers	Brain Substantia Nigra	brain
12	chr15:79168000-79172400	Enhancers	Fetal Lung	lung
13	chr15:79168000-79173000	Enhancers	Brain Hippocampus Middle	brain
14	chr15:79168000-79173600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:79168000-79174000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr15:79168000-79174800	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr15:79168200-79171600	Enhancers	A549	lung
18	chr15:79168800-79172800	Enhancers	Brain Angular Gyrus	brain
19	chr15:79169000-79172800	Enhancers	NHEK	skin
20	chr15:79169200-79172400	Enhancers	Duodenum Mucosa	Duodenum
21	chr15:79169200-79172600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr15:79169200-79172800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr15:79169200-79173000	Enhancers	Adipose Nuclei	Adipose
24	chr15:79169200-79173200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr15:79169200-79173400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr15:79169200-79173600	Weak transcription	Thymus	Thymus
27	chr15:79169400-79176400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:79169600-79171600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr15:79169600-79171800	Enhancers	Colon Smooth Muscle	Colon
30	chr15:79169600-79172000	Weak transcription	Right Ventricle	heart
31	chr15:79169600-79172800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr15:79169800-79172600	Enhancers	HMEC	breast
33	chr15:79169800-79180000	Weak transcription	Gastric	stomach
34	chr15:79170000-79171600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr15:79170000-79171800	Weak transcription	Fetal Thymus	thymus
36	chr15:79170000-79172200	Genic enhancers	Primary B cells from peripheral blood	blood
37	chr15:79170000-79174400	Genic enhancers	Hela-S3	cervix
38	chr15:79170000-79174600	Genic enhancers	HSMM	muscle
39	chr15:79170200-79172200	Enhancers	Fetal Brain Male	brain
40	chr15:79170200-79172600	Enhancers	Primary T cells from cord blood	blood
41	chr15:79170200-79187000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr15:79170400-79172200	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr15:79170400-79172200	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr15:79170400-79172200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr15:79170400-79172400	Weak transcription	Fetal Intestine Large	intestine
46	chr15:79170400-79172800	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr15:79170400-79172800	Enhancers	Osteobl	bone
48	chr15:79170400-79173000	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr15:79170400-79174000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:79170400-79177200	Weak transcription	Colonic Mucosa	Colon

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