Variant report

Variant	rs8029961
Chromosome Location	chr15:34402245-34402246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11072960	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11072962	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11629989	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11857888	0.82[ASN][1000 genomes]
rs28432827	0.80[ASN][1000 genomes]
rs34571863	0.81[ASN][1000 genomes]
rs3794592	0.80[ASN][1000 genomes]
rs3850095	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6495459	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs7181861	0.82[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv903986	chr15:34394273-34421951	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34395000-34407200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr15:34395400-34403600	Weak transcription	Psoas Muscle	Psoas
3	chr15:34395400-34408400	Weak transcription	HSMMtube	muscle
4	chr15:34395600-34403600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:34395600-34408200	Weak transcription	Fetal Muscle Leg	muscle
6	chr15:34396000-34407200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr15:34397800-34403800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:34402200-34402400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr15:34402200-34402400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr15:34402200-34402400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr15:34402200-34402400	Enhancers	HepG2	liver
12	chr15:34402200-34402400	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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