Variant report

Variant	rs8030817
Chromosome Location	chr15:53204217-53204218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11070921	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs11070935	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12899370	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs12900070	0.85[EUR][1000 genomes]
rs12912619	0.87[EUR][1000 genomes]
rs12913472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1899734	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs1899739	0.86[EUR][1000 genomes]
rs2068106	1.00[JPT][hapmap]
rs2120447	0.86[EUR][1000 genomes]
rs2165989	0.86[EUR][1000 genomes]
rs2414185	0.86[EUR][1000 genomes]
rs2440328	1.00[JPT][hapmap]
rs4776080	1.00[JPT][hapmap]
rs6493597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6493598	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6493599	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8032241	0.82[EUR][1000 genomes]
rs8032248	0.82[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53204200-53205000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:53204200-53205200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr15:53204200-53207400	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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