Variant report

Variant	rs8031102
Chromosome Location	chr15:34454655-34454656
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34452687..34455262-chr15:34501996..34503726,2	K562	blood:

Variant related genes	Relation type
ENSG00000134152	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10775222	0.96[ASN][1000 genomes]
rs10851950	0.92[ASN][1000 genomes]
rs11072998	0.94[ASN][1000 genomes]
rs11636442	0.96[ASN][1000 genomes]
rs11852537	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11854686	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11857205	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11857684	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12591181	0.90[ASN][1000 genomes]
rs12594077	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16958829	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16958835	0.83[ASN][1000 genomes]
rs16958836	0.83[ASN][1000 genomes]
rs16958848	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1836977	0.88[ASN][1000 genomes]
rs1836978	0.91[ASN][1000 genomes]
rs1978810	0.85[ASN][1000 genomes]
rs2339368	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2339369	0.94[ASN][1000 genomes]
rs28538047	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28652966	0.80[ASN][1000 genomes]
rs28768700	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28813796	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4780226	0.92[ASN][1000 genomes]
rs56731918	0.82[ASN][1000 genomes]
rs56936283	0.83[ASN][1000 genomes]
rs57530092	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57699120	0.82[ASN][1000 genomes]
rs57715967	0.85[ASN][1000 genomes]
rs58875083	0.82[ASN][1000 genomes]
rs59611916	0.83[ASN][1000 genomes]
rs59635553	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60749797	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6495558	0.85[ASN][1000 genomes]
rs6495580	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7166360	0.83[ASN][1000 genomes]
rs7172480	0.83[ASN][1000 genomes]
rs7172633	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7173244	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7174442	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7174586	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7175168	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7178203	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7178988	0.82[ASN][1000 genomes]
rs7181687	0.82[ASN][1000 genomes]
rs7181902	0.82[ASN][1000 genomes]
rs73376164	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73376168	0.83[ASN][1000 genomes]
rs73376178	0.85[ASN][1000 genomes]
rs73376181	0.85[ASN][1000 genomes]
rs73376192	0.85[ASN][1000 genomes]
rs73376193	0.85[ASN][1000 genomes]
rs73376196	0.85[ASN][1000 genomes]
rs73378126	0.82[ASN][1000 genomes]
rs73378128	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73378138	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73378141	0.98[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73378144	0.81[ASN][1000 genomes]
rs7497840	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7497951	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8025406	0.92[ASN][1000 genomes]
rs8025730	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026939	0.80[ASN][1000 genomes]
rs8027830	0.82[ASN][1000 genomes]
rs8028932	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8028950	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8034315	0.82[ASN][1000 genomes]
rs8035493	0.96[ASN][1000 genomes]
rs8036791	0.82[ASN][1000 genomes]
rs8040732	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040861	0.96[ASN][1000 genomes]
rs9920654	0.92[ASN][1000 genomes]
rs9972505	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8031102	NOP10	cis	Thyroid	GTEx

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34429800-34456800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr15:34443400-34456400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:34444000-34455400	Weak transcription	Brain Anterior Caudate	brain
4	chr15:34444400-34456400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr15:34445400-34459600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:34445800-34455600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:34445800-34459400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
8	chr15:34446200-34456000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:34448600-34454800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr15:34451400-34455200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:34451400-34456400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:34451800-34455200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
13	chr15:34452000-34455600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:34452000-34457800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
15	chr15:34452200-34454800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
16	chr15:34452200-34455000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
17	chr15:34452200-34455000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
18	chr15:34452200-34455000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
19	chr15:34452200-34455200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:34452200-34455200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:34452200-34455200	ZNF genes & repeats	Thymus	Thymus
22	chr15:34452200-34455200	ZNF genes & repeats	HMEC	breast
23	chr15:34452200-34456000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
24	chr15:34452200-34456600	ZNF genes & repeats	A549	lung
25	chr15:34452400-34455200	ZNF genes & repeats	Primary B cells from cord blood	blood
26	chr15:34452400-34455200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr15:34452400-34455200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr15:34452400-34455200	ZNF genes & repeats	Placenta	Placenta
29	chr15:34452600-34456200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
30	chr15:34452800-34455000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
31	chr15:34452800-34455000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
32	chr15:34452800-34455000	ZNF genes & repeats	Liver	Liver
33	chr15:34452800-34455000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
34	chr15:34452800-34455200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr15:34452800-34455200	ZNF genes & repeats	Fetal Intestine Large	intestine
36	chr15:34452800-34455200	ZNF genes & repeats	GM12878-XiMat	blood
37	chr15:34452800-34455800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
38	chr15:34452800-34456600	ZNF genes & repeats	Dnd41	blood
39	chr15:34453000-34454800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:34453000-34454800	ZNF genes & repeats	NHEK	skin
41	chr15:34453000-34455000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:34453000-34455000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
43	chr15:34453000-34455000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr15:34453000-34455000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
45	chr15:34453000-34455000	ZNF genes & repeats	Primary T cells from cord blood	blood
46	chr15:34453000-34455000	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
47	chr15:34453000-34455000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
48	chr15:34453000-34455000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
49	chr15:34453000-34455000	ZNF genes & repeats	Esophagus	oesophagus
50	chr15:34453000-34455000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum

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