Variant report

Variant	rs8035563
Chromosome Location	chr15:61488466-61488467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1025676	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10519115	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11071592	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12437877	0.82[ASN][1000 genomes]
rs12441507	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12441702	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12442490	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12593777	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1437545	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1437546	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1529991	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16943758	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16943763	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1813147	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2277557	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28611274	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28716779	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28754581	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4517733	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:61467400-61497600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:61475200-61492000	Weak transcription	Ovary	ovary
3	chr15:61479800-61519000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:61480000-61491200	Weak transcription	Colon Smooth Muscle	Colon
5	chr15:61480400-61489200	Weak transcription	Fetal Stomach	stomach
6	chr15:61484800-61488600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:61485200-61492000	Weak transcription	Left Ventricle	heart
8	chr15:61486200-61488600	Weak transcription	Gastric	stomach
9	chr15:61486200-61497400	Weak transcription	Lung	lung
10	chr15:61487000-61492200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:61487400-61488600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr15:61487800-61490200	Enhancers	Brain Anterior Caudate	brain
13	chr15:61488000-61488800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr15:61488200-61488800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:61488200-61490200	Enhancers	Psoas Muscle	Psoas
16	chr15:61488400-61488600	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr15:61488400-61489000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr15:61488400-61489200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr15:61488400-61489200	Enhancers	Fetal Muscle Leg	muscle
20	chr15:61488400-61493200	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links