Variant report

Variant	rs8035611
Chromosome Location	chr15:76230778-76230779
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76230095..76231887-chr15:76232023..76234158,2	K562	blood:
2	chr15:76225604..76228102-chr15:76229975..76232639,2	MCF-7	breast:
3	chr15:76230088..76234622-chr15:76234992..76238934,7	K562	blood:
4	chr15:76228613..76230905-chr15:76232150..76235048,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169752	Chromatin interaction

Extended variants
information (count: 178 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:174)

rs_ID	r²[population]
rs1039547	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13379955	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1394122	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1498196	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1498197	1.00[EUR][1000 genomes]
rs1498198	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1503955	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1532783	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1562403	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1695365	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16967747	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs170830	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1874955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1874956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1910510	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1976328	1.00[EUR][1000 genomes]
rs2133099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2133408	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2133409	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2133410	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2405578	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2441928	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2454209	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2454210	1.00[CEU][hapmap]
rs2454212	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2454470	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2454472	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2455897	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2460795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2460796	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2460801	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2469038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2469040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2593275	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2593281	1.00[EUR][1000 genomes]
rs2593302	1.00[EUR][1000 genomes]
rs2604405	1.00[EUR][1000 genomes]
rs2648435	1.00[CEU][hapmap]
rs2648437	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2655126	1.00[EUR][1000 genomes]
rs2655137	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2947239	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2959851	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs334923	1.00[EUR][1000 genomes]
rs334937	1.00[EUR][1000 genomes]
rs334939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs334940	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs334941	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs334951	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335674	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335675	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs335676	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335678	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335679	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335683	1.00[EUR][1000 genomes]
rs335684	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335687	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335693	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335694	1.00[EUR][1000 genomes]
rs335695	1.00[EUR][1000 genomes]
rs335700	1.00[EUR][1000 genomes]
rs335701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335710	0.85[EUR][1000 genomes]
rs335713	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335717	1.00[EUR][1000 genomes]
rs335724	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335725	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335726	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335728	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335729	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335732	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335733	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4482249	1.00[EUR][1000 genomes]
rs4489969	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4886750	0.85[EUR][1000 genomes]
rs55665712	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55719276	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55782145	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55828994	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56139080	1.00[EUR][1000 genomes]
rs56167836	1.00[EUR][1000 genomes]
rs56173902	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56218266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57011816	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57127155	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57141410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57429900	1.00[EUR][1000 genomes]
rs57737646	1.00[EUR][1000 genomes]
rs57968453	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57971067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57973358	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58044283	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58170668	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58399164	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58717562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58789594	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59143042	1.00[EUR][1000 genomes]
rs59690620	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59819402	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59839117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60088262	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60155009	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60191258	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60817295	1.00[EUR][1000 genomes]
rs60846313	1.00[EUR][1000 genomes]
rs61240117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61521312	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62027568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7173697	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7174280	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7174365	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7175758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7177048	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7180064	1.00[EUR][1000 genomes]
rs7181550	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7182720	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024005	1.00[EUR][1000 genomes]
rs74024006	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024007	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024009	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024011	1.00[EUR][1000 genomes]
rs74024014	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024015	1.00[EUR][1000 genomes]
rs74024016	1.00[EUR][1000 genomes]
rs74024017	1.00[EUR][1000 genomes]
rs74024019	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74024020	1.00[EUR][1000 genomes]
rs74024021	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024022	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024023	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024029	1.00[EUR][1000 genomes]
rs74024030	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024032	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024035	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024038	1.00[EUR][1000 genomes]
rs74024039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024040	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024041	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024042	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024043	1.00[EUR][1000 genomes]
rs74024044	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024045	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024047	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024048	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024049	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74024051	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024052	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024053	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024059	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024060	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8025372	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8028084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8028766	1.00[EUR][1000 genomes]
rs8030102	1.00[CEU][hapmap]
rs8030469	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8030948	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8031263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8033005	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8034430	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8036952	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8038729	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9672219	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9672952	0.95[AFR][1000 genomes]
rs974718	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904398	chr15:76220285-76359055	Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8035611	FBXO22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76198000-76231600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:76198200-76232200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:76207000-76232000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:76208400-76232800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:76211400-76240200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:76217200-76252000	Weak transcription	Pancreas	Pancrea
7	chr15:76217600-76231800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:76217600-76232600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr15:76219000-76232200	Weak transcription	Psoas Muscle	Psoas
10	chr15:76219600-76231200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr15:76221000-76230800	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr15:76221200-76232200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:76222000-76231800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:76222000-76232200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:76222200-76231600	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr15:76222800-76233200	Strong transcription	NH-A	brain
17	chr15:76223600-76236200	Weak transcription	Fetal Heart	heart
18	chr15:76224800-76233000	Weak transcription	Fetal Intestine Small	intestine
19	chr15:76224800-76233400	Strong transcription	A549	lung
20	chr15:76225200-76232600	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:76225600-76230800	Weak transcription	Colon Smooth Muscle	Colon
22	chr15:76225800-76231800	Weak transcription	Brain Germinal Matrix	brain
23	chr15:76226400-76236600	Weak transcription	Stomach Mucosa	stomach
24	chr15:76226600-76238600	Weak transcription	NHLF	lung
25	chr15:76226800-76231400	Weak transcription	Thymus	Thymus
26	chr15:76226800-76231600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr15:76226800-76231600	Weak transcription	Ovary	ovary
28	chr15:76226800-76231600	Weak transcription	Spleen	Spleen
29	chr15:76226800-76231800	Weak transcription	Fetal Stomach	stomach
30	chr15:76226800-76231800	Weak transcription	Lung	lung
31	chr15:76226800-76232000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr15:76226800-76232200	Weak transcription	Primary T cells from cord blood	blood
33	chr15:76226800-76232600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr15:76226800-76232800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr15:76226800-76233600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:76226800-76234600	Weak transcription	Adipose Nuclei	Adipose
37	chr15:76226800-76235000	Weak transcription	Fetal Kidney	kidney
38	chr15:76227000-76231600	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr15:76227000-76231800	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr15:76227000-76232600	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr15:76227000-76233400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr15:76227000-76234000	Weak transcription	HepG2	liver
43	chr15:76227200-76232000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr15:76227600-76232000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr15:76227800-76231000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr15:76227800-76231600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr15:76227800-76233000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr15:76227800-76236000	Weak transcription	Osteobl	bone
49	chr15:76228000-76232200	Weak transcription	NHDF-Ad	bronchial
50	chr15:76228000-76232400	Weak transcription	Stomach Smooth Muscle	stomach

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