Variant report
| Variant | rs8037017 |
|---|---|
| Chromosome Location | chr15:79139441-79139442 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11636545 | 0.91[EUR][1000 genomes] |
| rs11856903 | 0.99[EUR][1000 genomes] |
| rs12595538 | 0.89[EUR][1000 genomes] |
| rs28439027 | 0.99[EUR][1000 genomes] |
| rs4341710 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4401016 | 0.99[EUR][1000 genomes] |
| rs4533253 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4608303 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6495341 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6495346 | 0.86[EUR][1000 genomes] |
| rs7164529 | 0.97[EUR][1000 genomes] |
| rs7166501 | 0.99[EUR][1000 genomes] |
| rs7166723 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7173955 | 0.97[EUR][1000 genomes] |
| rs7175271 | 0.97[EUR][1000 genomes] |
| rs7180375 | 0.86[EUR][1000 genomes] |
| rs7181033 | 0.93[EUR][1000 genomes] |
| rs7402877 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7403393 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7403438 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7403442 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs8027870 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs8028410 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs8029173 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs8035783 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs8041818 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv917303 | chr15:78491050-79205255 | Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 122 gene(s) | inside rSNPs | diseases |
| 2 | nsv904431 | chr15:79006442-79155088 | Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | esv33573 | chr15:79053484-79293881 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 4 | nsv904432 | chr15:79066932-79175813 | Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:79134000-79147400 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 2 | chr15:79134800-79142800 | Weak transcription | Fetal Stomach | stomach |
