Variant report

Variant	rs8037347
Chromosome Location	chr15:78847135-78847136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78844003..78845527-chr15:78845642..78848545,2	K562	blood:
2	chr15:78832588..78837295-chr15:78846968..78850759,6	K562	blood:
3	chr15:78845755..78849755-chr15:78855790..78859263,3	K562	blood:
4	chr15:78831431..78836974-chr15:78839813..78847662,20	MCF-7	breast:
5	chr15:78838010..78843726-chr15:78843842..78847469,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000041357	Chromatin interaction
ENSG00000169684	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1504547	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71581745	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv1038816	chr15:78796434-78881087	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78836200-78857200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:78841200-78856800	Weak transcription	Hela-S3	cervix
3	chr15:78842000-78857400	Weak transcription	Psoas Muscle	Psoas
4	chr15:78842200-78848600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:78843000-78848600	Weak transcription	Brain Substantia Nigra	brain
6	chr15:78843000-78857200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr15:78843200-78857200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:78843400-78850600	Weak transcription	HepG2	liver
9	chr15:78843400-78853600	Weak transcription	K562	blood
10	chr15:78843400-78857000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:78843600-78847200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:78843600-78847400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr15:78843600-78847600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:78843600-78847600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr15:78843600-78847800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr15:78843600-78848600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr15:78843600-78852200	Weak transcription	A549	lung
18	chr15:78843600-78857400	Weak transcription	HSMM	muscle
19	chr15:78843800-78847400	Weak transcription	Liver	Liver
20	chr15:78843800-78847400	Weak transcription	Esophagus	oesophagus
21	chr15:78843800-78847400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr15:78843800-78847600	Weak transcription	Thymus	Thymus
23	chr15:78843800-78847800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr15:78843800-78847800	Weak transcription	Colon Smooth Muscle	Colon
25	chr15:78843800-78847800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr15:78843800-78848000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr15:78843800-78848000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr15:78843800-78848200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr15:78843800-78848400	Weak transcription	Fetal Brain Female	brain
30	chr15:78843800-78849400	Weak transcription	Fetal Muscle Leg	muscle
31	chr15:78843800-78856800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr15:78843800-78857200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr15:78843800-78857200	Weak transcription	Gastric	stomach
34	chr15:78843800-78857200	Weak transcription	Right Ventricle	heart
35	chr15:78844000-78847200	Weak transcription	Primary B cells from peripheral blood	blood
36	chr15:78844000-78848600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr15:78844000-78849200	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr15:78844200-78847600	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr15:78844200-78850000	Weak transcription	Fetal Thymus	thymus
40	chr15:78844400-78849800	Weak transcription	Primary T cells from cord blood	blood
41	chr15:78844600-78857000	Weak transcription	Left Ventricle	heart
42	chr15:78846800-78847400	Enhancers	GM12878-XiMat	blood

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