Variant report

Variant	rs8037656
Chromosome Location	chr15:76491952-76491953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76489752..76492594-chr15:76628754..76630476,2	K562	blood:
2	chr15:76484853..76487491-chr15:76488798..76492049,5	K562	blood:
3	chr15:76489835..76492594-chr15:76628976..76630921,2	K562	blood:
4	chr15:76486525..76491130-chr15:76491292..76495169,6	MCF-7	breast:
5	chr15:76490388..76492553-chr15:76494551..76496076,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159556	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs4082688	1.00[YRI][hapmap]
rs60191419	1.00[AFR][1000 genomes]
rs61293317	1.00[AFR][1000 genomes]
rs73446495	1.00[AFR][1000 genomes]
rs73446502	1.00[AFR][1000 genomes]
rs73448410	1.00[AFR][1000 genomes]
rs73451273	1.00[AFR][1000 genomes]
rs73451284	1.00[AFR][1000 genomes]
rs73451298	0.86[AFR][1000 genomes]
rs73453309	1.00[AFR][1000 genomes]
rs73453330	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1054713	chr15:76460462-76505906	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76483600-76493400	Enhancers	Stomach Mucosa	stomach
2	chr15:76484000-76498600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr15:76484000-76500800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:76484200-76498200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr15:76485400-76498400	Weak transcription	Fetal Brain Female	brain
6	chr15:76486000-76492000	Enhancers	Esophagus	oesophagus
7	chr15:76486800-76503000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:76486800-76516600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr15:76487000-76492200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:76487000-76498200	Weak transcription	Primary T cells from cord blood	blood
11	chr15:76487400-76492400	Enhancers	Psoas Muscle	Psoas
12	chr15:76487600-76492000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr15:76487800-76492000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:76488200-76492000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr15:76488200-76492200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:76488200-76492200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr15:76488200-76492600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:76488400-76492000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:76488400-76492000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:76488400-76492200	Enhancers	Right Ventricle	heart
21	chr15:76488400-76492400	Enhancers	Left Ventricle	heart
22	chr15:76488400-76492400	Enhancers	NHLF	lung
23	chr15:76488400-76492600	Enhancers	HSMM	muscle
24	chr15:76488400-76492600	Enhancers	NH-A	brain
25	chr15:76488400-76492800	Enhancers	Brain Angular Gyrus	brain
26	chr15:76488600-76492000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr15:76488600-76492400	Enhancers	Osteobl	bone
28	chr15:76488800-76492000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:76488800-76492200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:76488800-76496200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr15:76489000-76498200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr15:76489200-76492200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:76489200-76492400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr15:76489400-76492200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr15:76489400-76492200	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr15:76489400-76498000	Weak transcription	Brain Germinal Matrix	brain
37	chr15:76489400-76498800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr15:76489400-76502800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:76489400-76519800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr15:76489600-76492000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr15:76489600-76496800	Weak transcription	Ovary	ovary
42	chr15:76489600-76498200	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr15:76489600-76498400	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr15:76489600-76498600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr15:76489600-76499800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:76489600-76500000	Weak transcription	Fetal Lung	lung
47	chr15:76489600-76501800	Weak transcription	GM12878-XiMat	blood
48	chr15:76489600-76503000	Weak transcription	Small Intestine	intestine
49	chr15:76489800-76492800	Weak transcription	Fetal Intestine Small	intestine
50	chr15:76489800-76493400	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links