Variant report

Variant	rs8038374
Chromosome Location	chr15:79142727-79142728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11854896	0.91[YRI][hapmap]
rs1904921	1.00[AMR][1000 genomes]
rs28660353	1.00[AMR][1000 genomes]
rs4132787	1.00[AMR][1000 genomes]
rs4461040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4778764	1.00[AMR][1000 genomes]
rs59025733	1.00[AMR][1000 genomes]
rs6495357	1.00[AMR][1000 genomes]
rs6495359	1.00[AMR][1000 genomes]
rs7166429	0.91[YRI][hapmap]
rs7170672	1.00[AMR][1000 genomes]
rs8030180	1.00[AMR][1000 genomes]
rs8038643	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79134000-79147400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:79134800-79142800	Weak transcription	Fetal Stomach	stomach
3	chr15:79140600-79143000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:79141800-79142800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:79142200-79142800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:79142600-79143200	Enhancers	Brain Substantia Nigra	brain
7	chr15:79142600-79143200	Enhancers	HepG2	liver
8	chr15:79142600-79143400	Enhancers	Brain Cingulate Gyrus	brain
9	chr15:79142600-79143800	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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