Variant report

Variant	rs8038885
Chromosome Location	chr15:76492465-76492466
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76489752..76492594-chr15:76628754..76630476,2	K562	blood:
2	chr15:76489835..76492594-chr15:76628976..76630921,2	K562	blood:
3	chr15:76486525..76491130-chr15:76491292..76495169,6	MCF-7	breast:
4	chr15:76490388..76492553-chr15:76494551..76496076,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159556	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1047357	0.93[YRI][hapmap];0.92[AFR][1000 genomes]
rs11854972	0.85[YRI][hapmap]
rs12437866	0.81[YRI][hapmap]
rs12441111	0.82[YRI][hapmap]
rs12910640	0.82[YRI][hapmap]
rs60060261	0.84[AFR][1000 genomes]
rs62027007	0.82[AFR][1000 genomes]
rs62027010	0.82[AFR][1000 genomes]
rs62027014	0.82[AFR][1000 genomes]
rs62027016	0.82[AFR][1000 genomes]
rs7166675	0.80[AFR][1000 genomes]
rs7167004	0.85[YRI][hapmap]
rs7171795	0.81[YRI][hapmap]
rs7175442	0.84[AFR][1000 genomes]
rs72736888	0.82[AFR][1000 genomes]
rs8033926	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs8042654	0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1054713	chr15:76460462-76505906	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76483600-76493400	Enhancers	Stomach Mucosa	stomach
2	chr15:76484000-76498600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr15:76484000-76500800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:76484200-76498200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr15:76485400-76498400	Weak transcription	Fetal Brain Female	brain
6	chr15:76486800-76503000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:76486800-76516600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr15:76487000-76498200	Weak transcription	Primary T cells from cord blood	blood
9	chr15:76488200-76492600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:76488400-76492600	Enhancers	HSMM	muscle
11	chr15:76488400-76492600	Enhancers	NH-A	brain
12	chr15:76488400-76492800	Enhancers	Brain Angular Gyrus	brain
13	chr15:76488800-76496200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr15:76489000-76498200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr15:76489400-76498000	Weak transcription	Brain Germinal Matrix	brain
16	chr15:76489400-76498800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:76489400-76502800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:76489400-76519800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr15:76489600-76496800	Weak transcription	Ovary	ovary
20	chr15:76489600-76498200	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr15:76489600-76498400	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr15:76489600-76498600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr15:76489600-76499800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr15:76489600-76500000	Weak transcription	Fetal Lung	lung
25	chr15:76489600-76501800	Weak transcription	GM12878-XiMat	blood
26	chr15:76489600-76503000	Weak transcription	Small Intestine	intestine
27	chr15:76489800-76492800	Weak transcription	Fetal Intestine Small	intestine
28	chr15:76489800-76493400	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr15:76489800-76494600	Weak transcription	Fetal Intestine Large	intestine
30	chr15:76489800-76496000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr15:76489800-76498800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr15:76490000-76503600	Weak transcription	HUVEC	blood vessel
33	chr15:76490200-76492600	Weak transcription	Spleen	Spleen
34	chr15:76490200-76492800	Weak transcription	Brain Anterior Caudate	brain
35	chr15:76490200-76492800	Weak transcription	Brain Hippocampus Middle	brain
36	chr15:76490200-76496000	Weak transcription	Pancreas	Pancrea
37	chr15:76490200-76498000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr15:76490200-76498200	Weak transcription	Lung	lung
39	chr15:76490400-76494600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr15:76490400-76497000	Weak transcription	Duodenum Mucosa	Duodenum
41	chr15:76490400-76498200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr15:76490400-76501600	Weak transcription	Primary B cells from cord blood	blood
43	chr15:76490600-76498600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr15:76491000-76494000	Enhancers	Fetal Heart	heart
45	chr15:76491200-76493600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr15:76491200-76497400	Weak transcription	Gastric	stomach
47	chr15:76491200-76500600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr15:76491400-76495600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr15:76491400-76502800	Weak transcription	HMEC	breast
50	chr15:76491600-76492600	Enhancers	HSMMtube	muscle

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