Variant report

Variant	rs8039431
Chromosome Location	chr15:34474016-34474017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10851947	0.84[EUR][1000 genomes]
rs11639176	0.84[EUR][1000 genomes]
rs2164623	0.89[EUR][1000 genomes]
rs4587944	0.84[EUR][1000 genomes]
rs4780225	0.89[EUR][1000 genomes]
rs7163031	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv3507159	chr15:34456709-34485891	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	esv3507160	chr15:34456709-34485891	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	esv3326811	chr15:34472885-34475433	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3325114	chr15:34473010-34475108	Enhancers Weak transcription Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3404797	chr15:34473510-34474758	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3419089	chr15:34473937-34474104	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34453600-34474600	Weak transcription	Colon Smooth Muscle	Colon
2	chr15:34454000-34477400	Weak transcription	HSMM	muscle
3	chr15:34454200-34497800	Weak transcription	Osteobl	bone
4	chr15:34454600-34501200	Weak transcription	Colonic Mucosa	Colon
5	chr15:34454800-34501000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:34459000-34478400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:34464600-34500400	Weak transcription	Hela-S3	cervix
8	chr15:34464800-34477000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:34465000-34477800	Weak transcription	Thymus	Thymus
10	chr15:34466400-34500400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:34466600-34482800	Weak transcription	NHDF-Ad	bronchial
12	chr15:34466800-34475200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:34466800-34477400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:34466800-34477600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:34466800-34477600	Weak transcription	Primary B cells from cord blood	blood
16	chr15:34467000-34475200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:34467000-34477200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr15:34467000-34500800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr15:34467200-34478400	Weak transcription	Lung	lung
20	chr15:34467200-34491400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:34467200-34500200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:34467400-34486200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:34468000-34478400	Weak transcription	Dnd41	blood
24	chr15:34468000-34496400	Weak transcription	Fetal Lung	lung
25	chr15:34468000-34497800	Weak transcription	NHEK	skin
26	chr15:34468200-34475200	Weak transcription	A549	lung
27	chr15:34468200-34478200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr15:34468200-34485800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr15:34468200-34498000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr15:34468400-34477000	Weak transcription	Primary T cells from cord blood	blood
31	chr15:34468600-34475400	Weak transcription	Placenta	Placenta
32	chr15:34468600-34480600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:34468800-34477400	Weak transcription	Fetal Stomach	stomach
34	chr15:34469200-34477200	Weak transcription	Fetal Muscle Leg	muscle
35	chr15:34469600-34475200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:34469800-34475200	Weak transcription	Left Ventricle	heart
37	chr15:34470200-34474600	Weak transcription	HUVEC	blood vessel
38	chr15:34470200-34475200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:34470200-34477400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr15:34470400-34477800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr15:34471000-34501000	Weak transcription	Aorta	Aorta
42	chr15:34471400-34481000	Weak transcription	Brain Angular Gyrus	brain
43	chr15:34471600-34500400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr15:34471800-34477400	Weak transcription	Primary hematopoietic stem cells	blood
45	chr15:34472200-34477200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr15:34472400-34475600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr15:34472800-34475200	Weak transcription	K562	blood
48	chr15:34473000-34475200	Weak transcription	HepG2	liver
49	chr15:34473000-34480600	Weak transcription	Brain Anterior Caudate	brain
50	chr15:34473200-34477000	Weak transcription	Fetal Intestine Small	intestine

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