Variant report

Variant	rs8039616
Chromosome Location	chr15:78144896-78144897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78143411..78145783-chr15:78149960..78151669,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11633959	0.90[ASN][1000 genomes]
rs12438272	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34260472	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4496098	0.91[ASN][1000 genomes]
rs4625695	0.90[ASN][1000 genomes]
rs56994721	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71407228	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv833062	chr15:78035206-78220358	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv904424	chr15:78059488-78158893	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv904425	chr15:78064664-78153850	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1833316	chr15:78081307-78328108	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv904426	chr15:78090630-78264164	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv904427	chr15:78129964-78251431	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78140400-78149000	Weak transcription	Fetal Brain Male	brain
2	chr15:78143000-78146000	Enhancers	Fetal Intestine Small	intestine
3	chr15:78143400-78145600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:78143600-78145000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:78143600-78145400	Enhancers	Fetal Intestine Large	intestine
6	chr15:78143800-78145400	Enhancers	Colonic Mucosa	Colon
7	chr15:78143800-78145400	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr15:78144000-78145600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:78144400-78145600	Bivalent Enhancer	Fetal Muscle Leg	muscle
10	chr15:78144400-78149000	Weak transcription	Fetal Brain Female	brain
11	chr15:78144600-78145000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:78144600-78145000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:78144600-78145000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:78144600-78145000	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr15:78144600-78145200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:78144600-78145400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr15:78144600-78145400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr15:78144600-78145400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
19	chr15:78144800-78145000	Flanking Active TSS	Duodenum Mucosa	Duodenum
20	chr15:78144800-78145000	Bivalent/Poised TSS	NHEK	skin

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