Variant report

Variant	rs8039673
Chromosome Location	chr15:76756516-76756517
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs4082688	0.87[AFR][1000 genomes]
rs57026560	0.87[AFR][1000 genomes]
rs57931886	0.87[AFR][1000 genomes]
rs60794367	0.87[AFR][1000 genomes]
rs7170187	0.87[AFR][1000 genomes]
rs7174377	0.87[AFR][1000 genomes]
rs7175175	0.87[AFR][1000 genomes]
rs73442152	1.00[AFR][1000 genomes]
rs73442155	1.00[AFR][1000 genomes]
rs73442176	1.00[AFR][1000 genomes]
rs73442185	1.00[AFR][1000 genomes]
rs73442188	1.00[AFR][1000 genomes]
rs73444261	1.00[AFR][1000 genomes]
rs73444264	1.00[AFR][1000 genomes]
rs73444270	0.87[AFR][1000 genomes]
rs73444271	0.87[AFR][1000 genomes]
rs73444275	0.87[AFR][1000 genomes]
rs73448115	0.87[AFR][1000 genomes]
rs73450219	0.87[AFR][1000 genomes]
rs73450231	0.87[AFR][1000 genomes]
rs73450253	0.87[AFR][1000 genomes]
rs73457057	1.00[AFR][1000 genomes]
rs73457073	1.00[AFR][1000 genomes]
rs73457079	1.00[AFR][1000 genomes]
rs73461319	0.87[AFR][1000 genomes]
rs73461327	0.87[AFR][1000 genomes]
rs73461329	0.87[AFR][1000 genomes]
rs73461332	0.87[AFR][1000 genomes]
rs73461338	0.87[AFR][1000 genomes]
rs73461343	0.87[AFR][1000 genomes]
rs8043089	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76711600-76767200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:76720800-76763600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:76723000-76757600	Weak transcription	Aorta	Aorta
4	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
5	chr15:76740600-76757600	Weak transcription	Fetal Intestine Small	intestine
6	chr15:76741000-76757600	Weak transcription	Primary B cells from cord blood	blood
7	chr15:76742800-76762400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr15:76750400-76763800	Weak transcription	Placenta	Placenta
9	chr15:76753200-76757800	Weak transcription	Liver	Liver
10	chr15:76753200-76762800	Weak transcription	Esophagus	oesophagus
11	chr15:76753400-76760800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr15:76753600-76761600	Weak transcription	Adipose Nuclei	Adipose
13	chr15:76753800-76764400	Weak transcription	Fetal Intestine Large	intestine
14	chr15:76754000-76757600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:76754000-76764400	Weak transcription	Brain Hippocampus Middle	brain
16	chr15:76754200-76763600	Weak transcription	Pancreas	Pancrea
17	chr15:76754400-76763600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:76754600-76757400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr15:76754800-76757600	Weak transcription	Primary T cells from cord blood	blood
20	chr15:76754800-76758000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr15:76754800-76762000	Weak transcription	Ovary	ovary
22	chr15:76754800-76764400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr15:76755200-76761200	Weak transcription	Brain Anterior Caudate	brain
24	chr15:76755600-76764600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr15:76755800-76757400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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