Variant report

Variant	rs8043089
Chromosome Location	chr15:76769419-76769420
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs4082688	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs57026560	0.87[AFR][1000 genomes]
rs57931886	0.87[AFR][1000 genomes]
rs60794367	0.87[AFR][1000 genomes]
rs7170187	0.87[AFR][1000 genomes]
rs7174377	0.87[AFR][1000 genomes]
rs7175175	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs73442152	1.00[AFR][1000 genomes]
rs73442155	1.00[AFR][1000 genomes]
rs73442176	1.00[AFR][1000 genomes]
rs73442185	1.00[AFR][1000 genomes]
rs73442188	1.00[AFR][1000 genomes]
rs73444261	1.00[AFR][1000 genomes]
rs73444264	1.00[AFR][1000 genomes]
rs73444270	0.87[AFR][1000 genomes]
rs73444271	0.87[AFR][1000 genomes]
rs73444275	0.87[AFR][1000 genomes]
rs73448115	0.87[AFR][1000 genomes]
rs73450219	0.87[AFR][1000 genomes]
rs73450231	0.87[AFR][1000 genomes]
rs73450253	0.87[AFR][1000 genomes]
rs73457057	1.00[AFR][1000 genomes]
rs73457073	1.00[AFR][1000 genomes]
rs73457079	1.00[AFR][1000 genomes]
rs73461319	0.87[AFR][1000 genomes]
rs73461327	0.87[AFR][1000 genomes]
rs73461329	0.87[AFR][1000 genomes]
rs73461332	0.87[AFR][1000 genomes]
rs73461338	0.87[AFR][1000 genomes]
rs73461343	0.87[AFR][1000 genomes]
rs8039673	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
2	chr15:76759800-76770400	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:76760000-76772600	Weak transcription	GM12878-XiMat	blood
4	chr15:76760400-76773800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:76762000-76771400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:76762800-76771200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:76763000-76795000	Weak transcription	Primary B cells from cord blood	blood
8	chr15:76763200-76770200	Weak transcription	Adipose Nuclei	Adipose
9	chr15:76763600-76775200	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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