Variant report

Variant	rs8045793
Chromosome Location	chr16:80192394-80192395
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11150249	0.81[EUR][1000 genomes]
rs12102804	0.84[EUR][1000 genomes]
rs1382389	0.83[EUR][1000 genomes]
rs2169804	0.84[EUR][1000 genomes]
rs2169806	0.92[CEU][hapmap];0.85[CHB][hapmap];0.84[EUR][1000 genomes]
rs4889112	0.80[EUR][1000 genomes]
rs4889115	0.82[EUR][1000 genomes]
rs4889116	0.84[EUR][1000 genomes]
rs7189918	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7205467	0.82[EUR][1000 genomes]
rs8045772	0.87[EUR][1000 genomes]
rs8045952	0.87[EUR][1000 genomes]
rs8047391	0.83[EUR][1000 genomes]
rs8061813	0.83[EUR][1000 genomes]
rs9673185	0.83[EUR][1000 genomes]
rs9926605	0.83[EUR][1000 genomes]
rs9930130	0.84[EUR][1000 genomes]
rs9940589	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv15881	chr16:80191198-80193029	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80186600-80192600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr16:80186600-80197600	Weak transcription	HSMMtube	muscle
3	chr16:80191200-80193600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr16:80191600-80193600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr16:80191800-80193400	Enhancers	Osteobl	bone
6	chr16:80191800-80193600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr16:80191800-80193600	Enhancers	NH-A	brain
8	chr16:80191800-80193800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr16:80192000-80193400	Enhancers	HMEC	breast
10	chr16:80192000-80193600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr16:80192000-80193600	Enhancers	HUVEC	blood vessel
12	chr16:80192200-80193600	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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