Variant report

Variant	rs8047495
Chromosome Location	chr16:81128518-81128519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:81062101..81064821-chr16:81128185..81130104,2	MCF-7	breast:
2	chr16:81040036..81041738-chr16:81128465..81130557,3	MCF-7	breast:
3	chr16:81109242..81112738-chr16:81125910..81131139,12	MCF-7	breast:
4	chr16:81128511..81130849-chr16:81169835..81172966,4	MCF-7	breast:
5	chr16:81109109..81111856-chr16:81126620..81130593,5	MCF-7	breast:
6	chr16:81123255..81125056-chr16:81127455..81129707,2	MCF-7	breast:
7	chr16:81108969..81114076-chr16:81128464..81132360,7	K562	blood:
8	chr16:81109367..81115509-chr16:81122988..81128884,9	K562	blood:
9	chr16:81128119..81130536-chr16:81138830..81141315,2	K562	blood:
10	chr16:81068173..81071730-chr16:81126382..81131671,6	MCF-7	breast:
11	chr16:81068545..81070561-chr16:81128158..81130238,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000260213	Chromatin interaction
ENSG00000245059	Chromatin interaction
ENSG00000166473	Chromatin interaction
ENSG00000166454	Chromatin interaction
ENSG00000103121	Chromatin interaction
ENSG00000261061	Chromatin interaction
ENSG00000252608	Chromatin interaction
ENSG00000166455	Chromatin interaction
ENSG00000166451	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11866124	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12444974	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12921990	0.88[ASN][1000 genomes]
rs12928790	0.88[ASN][1000 genomes]
rs1563072	0.80[EUR][1000 genomes]
rs34270219	0.88[ASN][1000 genomes]
rs35887664	0.81[ASN][1000 genomes]
rs36052656	0.88[ASN][1000 genomes]
rs4889225	0.81[EUR][1000 genomes]
rs4889229	0.81[EUR][1000 genomes]
rs4889230	0.81[EUR][1000 genomes]
rs4889233	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5023849	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5023850	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5023852	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59022620	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60303302	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6420419	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6420421	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6564819	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7185637	0.82[EUR][1000 genomes]
rs7203546	0.81[EUR][1000 genomes]
rs7206814	0.81[EUR][1000 genomes]
rs73597252	0.80[EUR][1000 genomes]
rs8043855	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs804902	0.81[EUR][1000 genomes]
rs8050720	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8052694	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs8059692	0.80[EUR][1000 genomes]
rs8177849	0.88[ASN][1000 genomes]
rs8177862	0.88[ASN][1000 genomes]
rs8177863	0.88[ASN][1000 genomes]
rs8177876	0.80[EUR][1000 genomes]
rs8177878	0.88[ASN][1000 genomes]
rs8177891	0.90[ASN][1000 genomes]
rs8177919	0.83[ASN][1000 genomes]
rs8177938	0.81[ASN][1000 genomes]
rs874437	0.80[EUR][1000 genomes]
rs935942	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948534	chr16:80867635-81160492	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	nsv532597	chr16:81009718-81388348	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv427984	chr16:81026691-81320341	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv1062724	chr16:81052312-81137007	Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	esv2422360	chr16:81066033-81180727	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	esv2751615	chr16:81093099-81307599	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
8	nsv530715	chr16:81117168-81252875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv907005	chr16:81121353-81194912	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs8047495	C16orf46	Cis_1M	lymphoblastoid	RTeQTL
rs8047495	CENPN	Cis_1M	lymphoblastoid	RTeQTL
rs8047495	ATMIN	cis	Muscle Skeletal	GTEx
rs8047495	GCSH///LOC654085///LOC730107	Cis_1M	lymphoblastoid	RTeQTL
rs8047495	GCSH///LOC730107	Cis_1M	lymphoblastoid	RTeQTL
rs8047495	GCSH	cis	Muscle Skeletal	GTEx

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81111400-81128800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr16:81111400-81128800	Weak transcription	Psoas Muscle	Psoas
3	chr16:81111400-81128800	Weak transcription	NHDF-Ad	bronchial
4	chr16:81111400-81129000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr16:81111400-81129000	Weak transcription	Gastric	stomach
6	chr16:81111400-81129200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr16:81111600-81128600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr16:81111600-81128600	Weak transcription	Fetal Kidney	kidney
9	chr16:81111600-81128600	Weak transcription	Pancreas	Pancrea
10	chr16:81111600-81128800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr16:81111600-81128800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr16:81111600-81128800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr16:81111600-81128800	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr16:81111600-81128800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr16:81111600-81128800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr16:81111600-81128800	Weak transcription	Colon Smooth Muscle	Colon
17	chr16:81111600-81128800	Weak transcription	Fetal Brain Female	brain
18	chr16:81111600-81128800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr16:81111600-81128800	Weak transcription	Right Atrium	heart
20	chr16:81111600-81128800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr16:81111600-81128800	Weak transcription	HSMMtube	muscle
22	chr16:81111600-81128800	Weak transcription	Osteobl	bone
23	chr16:81111600-81129000	Weak transcription	Brain Germinal Matrix	brain
24	chr16:81111600-81129000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr16:81111600-81129200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr16:81111600-81129200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr16:81111600-81129200	Weak transcription	Left Ventricle	heart
28	chr16:81111800-81128800	Weak transcription	Fetal Brain Male	brain
29	chr16:81111800-81128800	Weak transcription	Fetal Thymus	thymus
30	chr16:81120800-81128600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr16:81122000-81129400	Weak transcription	Small Intestine	intestine
32	chr16:81123200-81128800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr16:81123200-81129200	Weak transcription	Lung	lung
34	chr16:81123400-81128600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr16:81123400-81128600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr16:81123400-81128600	Weak transcription	Fetal Intestine Large	intestine
37	chr16:81123400-81128800	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr16:81123600-81128600	Weak transcription	Fetal Muscle Leg	muscle
39	chr16:81123600-81128600	Weak transcription	Ovary	ovary
40	chr16:81123600-81128800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr16:81123600-81128800	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr16:81123600-81129200	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr16:81124000-81129000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr16:81124800-81128600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr16:81125000-81128600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr16:81125000-81128600	Weak transcription	Primary T cells from cord blood	blood
47	chr16:81125800-81128600	Strong transcription	Fetal Stomach	stomach
48	chr16:81125800-81129000	Weak transcription	Right Ventricle	heart
49	chr16:81126200-81128600	Weak transcription	Brain Angular Gyrus	brain
50	chr16:81126600-81128800	Weak transcription	Fetal Intestine Small	intestine

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