Variant report

Variant	rs8073456
Chromosome Location	chr17:34125123-34125124
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:34124630-34125453	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:34113865..34115721-chr17:34122812..34125155,2	MCF-7	breast:
2	chr17:34123180..34125521-chr17:34136848..34139147,2	K562	blood:
3	chr17:34113403..34117361-chr17:34123102..34125354,3	K562	blood:
4	chr17:34106307..34108184-chr17:34123569..34126227,2	MCF-7	breast:

Variant related genes	Relation type
MMP28	TF binding region
ENSG00000129270	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10451309	0.86[GIH][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs1065341	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs16963927	1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs16971570	0.89[EUR][1000 genomes]
rs16971585	0.87[EUR][1000 genomes]
rs16971600	1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs16971620	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs16971624	1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs2735482	1.00[CEU][hapmap]
rs28912069	0.82[EUR][1000 genomes]
rs28914812	0.82[EUR][1000 genomes]
rs28914818	0.84[EUR][1000 genomes]
rs4251704	0.89[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs4251710	0.89[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs4251744	1.00[EUR][1000 genomes]
rs4251776	1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs59536691	0.82[EUR][1000 genomes]
rs60040900	0.80[EUR][1000 genomes]
rs61590868	0.82[EUR][1000 genomes]
rs7209512	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7224965	0.80[EUR][1000 genomes]
rs965984	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9674851	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs9895464	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs9896368	0.87[TSI][hapmap]
rs9898128	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs9901469	0.80[EUR][1000 genomes]
rs9907320	0.80[EUR][1000 genomes]
rs9914929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34123000-34126800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr17:34123000-34127000	Weak transcription	Lung	lung
3	chr17:34123000-34127000	Weak transcription	Right Atrium	heart
4	chr17:34123000-34127000	Weak transcription	Spleen	Spleen
5	chr17:34123000-34127200	Weak transcription	Aorta	Aorta
6	chr17:34123200-34126200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr17:34123200-34126400	Weak transcription	Colon Smooth Muscle	Colon
8	chr17:34123200-34126800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr17:34123200-34126800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr17:34123200-34127000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr17:34123200-34127000	Weak transcription	Left Ventricle	heart
12	chr17:34123200-34127200	Weak transcription	Right Ventricle	heart
13	chr17:34123400-34126200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr17:34123400-34126600	Weak transcription	Adipose Nuclei	Adipose
15	chr17:34123400-34126600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr17:34123400-34127000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr17:34123600-34125200	Weak transcription	Hela-S3	cervix
18	chr17:34123600-34126800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr17:34123600-34126800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr17:34123600-34126800	Weak transcription	HMEC	breast
21	chr17:34123600-34127000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr17:34124000-34126800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr17:34124800-34126600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr17:34124800-34126800	Weak transcription	Rectal Mucosa Donor 31	rectum

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