Variant report

Variant	rs8073935
Chromosome Location	chr17:33985849-33985850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:33984816..33987064-chr17:33989819..33992082,2	K562	blood:
2	chr17:33905920..33908004-chr17:33983373..33986029,2	K562	blood:
3	chr17:33983734..33986316-chr17:33989819..33992432,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10068	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11080357	0.80[EUR][1000 genomes]
rs11653310	0.85[EUR][1000 genomes]
rs11656138	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1671656	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17637907	0.84[EUR][1000 genomes]
rs225243	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs225247	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs225251	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs225254	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs225259	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs225262	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs225277	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs225295	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs225304	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs225306	0.90[ASN][1000 genomes]
rs2840044	0.84[EUR][1000 genomes]
rs28667378	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7212704	0.85[EUR][1000 genomes]
rs8069037	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9891800	0.85[EUR][1000 genomes]
rs9900378	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9913003	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
2	nsv908079	chr17:33849869-34034851	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv1060890	chr17:33884124-34011034	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	nsv543318	chr17:33884124-34011034	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33916800-34001200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr17:33921000-34024400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:33931000-34040200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr17:33933000-33997800	Weak transcription	Esophagus	oesophagus
5	chr17:33948800-34010600	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr17:33949000-33986400	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr17:33949200-34001200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr17:33954600-34001800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr17:33954600-34006000	Weak transcription	Stomach Mucosa	stomach
10	chr17:33958200-33992400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr17:33958200-33992400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr17:33960000-34024600	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr17:33960200-33987600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr17:33963400-34001200	Weak transcription	Aorta	Aorta
15	chr17:33966000-34002000	Strong transcription	Primary T cells from cord blood	blood
16	chr17:33968000-33997600	Weak transcription	HSMMtube	muscle
17	chr17:33968000-34055800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr17:33968400-33997800	Weak transcription	Brain Substantia Nigra	brain
19	chr17:33969000-33989800	Weak transcription	Psoas Muscle	Psoas
20	chr17:33969000-34001200	Weak transcription	Right Ventricle	heart
21	chr17:33969400-34001200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr17:33969600-33997600	Weak transcription	Brain Anterior Caudate	brain
23	chr17:33969600-33998600	Weak transcription	Fetal Brain Male	brain
24	chr17:33970000-33995400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr17:33970000-33997800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr17:33970400-33987600	Weak transcription	Fetal Heart	heart
27	chr17:33970400-34001200	Weak transcription	Small Intestine	intestine
28	chr17:33971200-33992000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr17:33971200-33997800	Weak transcription	Colon Smooth Muscle	Colon
30	chr17:33972000-33990600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr17:33972000-33998800	Weak transcription	Ovary	ovary
32	chr17:33974400-33992600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr17:33975000-34025800	Strong transcription	Primary B cells from peripheral blood	blood
34	chr17:33975400-33992800	Strong transcription	Primary B cells from cord blood	blood
35	chr17:33975600-33991400	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr17:33976600-33991600	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr17:33976800-33986400	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr17:33976800-33988800	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr17:33977000-33994600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr17:33977200-33988200	Strong transcription	Dnd41	blood
41	chr17:33977200-33993800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr17:33977200-34010400	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr17:33977400-33988000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr17:33977400-33988400	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr17:33977800-33990600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr17:33977800-33990600	Weak transcription	Spleen	Spleen
47	chr17:33977800-33997800	Weak transcription	Gastric	stomach
48	chr17:33978000-33990400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr17:33978000-33990600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr17:33978000-33997800	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links