Variant report

Variant	rs8089598
Chromosome Location	chr18:28827706-28827707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs11659665	1.00[CEU][hapmap];0.93[CHB][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11660638	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11663924	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11664596	0.95[EUR][1000 genomes]
rs11873223	0.84[EUR][1000 genomes]
rs11873281	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12606446	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12606722	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12957659	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12958069	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12958073	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12958351	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12958377	0.85[EUR][1000 genomes]
rs12959058	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12964422	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12964443	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12964744	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12964748	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12964839	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12964907	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12965148	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12965177	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12965803	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12965829	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1544880	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1593511	0.82[EUR][1000 genomes]
rs17658464	0.91[EUR][1000 genomes]
rs2042720	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2162274	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28372393	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28510667	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28615832	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28633353	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34187983	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34212801	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34301793	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34530511	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34634416	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34664857	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34743470	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35136508	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35220971	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35223713	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35229932	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35257713	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35287825	0.84[EUR][1000 genomes]
rs35362621	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35596545	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35909227	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4349226	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4408611	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4517864	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4539673	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4598984	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55776955	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55778425	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55965644	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56088904	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56308568	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62087700	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62087701	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62087702	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62087703	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62088665	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62090396	0.83[EUR][1000 genomes]
rs62090401	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6506899	0.84[EUR][1000 genomes]
rs6506903	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6506904	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67014182	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67550130	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7226461	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7227412	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7229569	0.82[EUR][1000 genomes]
rs7230461	1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7231460	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7232206	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7233386	0.85[ASN][1000 genomes]
rs7235384	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7239695	0.95[EUR][1000 genomes]
rs7240897	0.95[EUR][1000 genomes]
rs7241874	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7242742	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7243151	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7243262	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7243638	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7243885	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7243922	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7243984	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7244015	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7244050	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7244153	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7244510	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7245008	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72914749	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8087103	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8087786	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8088637	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8088973	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8089762	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8091715	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8091871	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs966376	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9946611	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9950769	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9950949	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9950971	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9951016	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9951341	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9957758	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9963626	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28820600-28828000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr18:28824800-28830200	Weak transcription	Left Ventricle	heart
3	chr18:28825200-28835400	Weak transcription	Right Atrium	heart
4	chr18:28825400-28828000	Enhancers	GM12878-XiMat	blood
5	chr18:28826000-28829000	Weak transcription	NH-A	brain
6	chr18:28826000-28831000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr18:28826200-28828800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr18:28826200-28830200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr18:28826600-28827800	Weak transcription	HepG2	liver
10	chr18:28826600-28828000	Enhancers	Placenta Amnion	Placenta Amnion
11	chr18:28826800-28827800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr18:28826800-28828200	Enhancers	Hela-S3	cervix
13	chr18:28827000-28828800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr18:28827000-28841400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr18:28827400-28828200	Enhancers	Liver	Liver
16	chr18:28827400-28828600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr18:28827400-28830000	Enhancers	HMEC	breast
18	chr18:28827600-28827800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr18:28827600-28827800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr18:28827600-28827800	Enhancers	Fetal Kidney	kidney
21	chr18:28827600-28827800	Enhancers	Pancreas	Pancrea
22	chr18:28827600-28828000	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr18:28827600-28828000	Enhancers	Fetal Heart	heart
24	chr18:28827600-28828000	Enhancers	Fetal Intestine Large	intestine
25	chr18:28827600-28828000	Enhancers	Fetal Intestine Small	intestine
26	chr18:28827600-28828000	Enhancers	A549	lung
27	chr18:28827600-28829000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr18:28827600-28829000	Enhancers	NHEK	skin
29	chr18:28827600-28829800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr18:28827600-28831600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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