Variant report

Variant	rs8093716
Chromosome Location	chr18:30268383-30268384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10502606	0.84[GIH][hapmap];1.00[JPT][hapmap]
rs10502607	1.00[JPT][hapmap]
rs12454261	0.97[GIH][hapmap];1.00[JPT][hapmap]
rs12454409	0.87[GIH][hapmap];1.00[JPT][hapmap]
rs12456916	0.97[GIH][hapmap];1.00[JPT][hapmap]
rs12456996	1.00[JPT][hapmap]
rs12956176	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs12956370	1.00[JPT][hapmap]
rs12956427	1.00[JPT][hapmap]
rs12961920	0.84[GIH][hapmap]
rs12967667	0.97[GIH][hapmap];1.00[JPT][hapmap]
rs12967862	1.00[JPT][hapmap]
rs12968405	1.00[JPT][hapmap]
rs12968480	0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs12969530	1.00[JPT][hapmap]
rs12969651	0.93[GIH][hapmap]
rs12969787	0.84[GIH][hapmap]
rs12969799	0.84[GIH][hapmap];1.00[JPT][hapmap]
rs12970129	0.93[GIH][hapmap]
rs12970723	0.93[GIH][hapmap]
rs1357535	1.00[JPT][hapmap]
rs1357536	1.00[JPT][hapmap]
rs1403762	0.97[GIH][hapmap];1.00[JPT][hapmap]
rs1523579	1.00[JPT][hapmap]
rs1523591	1.00[JPT][hapmap]
rs16963829	1.00[JPT][hapmap]
rs17665358	1.00[JPT][hapmap]
rs2030622	1.00[JPT][hapmap]
rs2049335	0.83[GIH][hapmap]
rs2132819	0.93[GIH][hapmap]
rs2140447	0.84[GIH][hapmap];1.00[JPT][hapmap]
rs2140448	1.00[JPT][hapmap]
rs2140449	1.00[JPT][hapmap]
rs2421641	1.00[JPT][hapmap]
rs3848486	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4486983	0.85[CHB][hapmap];0.90[GIH][hapmap]
rs4597394	1.00[JPT][hapmap]
rs55962103	0.87[EUR][1000 genomes]
rs6506979	0.81[AMR][1000 genomes]
rs6506982	0.97[GIH][hapmap];1.00[JPT][hapmap]
rs6506983	1.00[JPT][hapmap]
rs6506985	1.00[JPT][hapmap]
rs6506986	1.00[JPT][hapmap]
rs7228954	0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs7233463	1.00[JPT][hapmap]
rs7234525	0.93[GIH][hapmap];0.81[MEX][hapmap]
rs7234772	0.93[GIH][hapmap];1.00[JPT][hapmap]
rs7239898	0.97[GIH][hapmap]
rs8099131	0.97[GIH][hapmap];1.00[JPT][hapmap]
rs9646509	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs9946664	0.93[GIH][hapmap]
rs9951265	0.97[GIH][hapmap];1.00[JPT][hapmap]
rs9951538	0.84[GIH][hapmap];1.00[JPT][hapmap]
rs9952507	1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs9953954	0.97[GIH][hapmap];1.00[JPT][hapmap]
rs9954988	0.84[GIH][hapmap];1.00[JPT][hapmap]
rs9955000	1.00[JPT][hapmap]
rs9955063	1.00[JPT][hapmap]
rs9955106	0.93[GIH][hapmap]
rs9957809	1.00[JPT][hapmap]
rs9957814	1.00[JPT][hapmap]
rs9962132	0.93[GIH][hapmap];1.00[JPT][hapmap]
rs9963435	1.00[JPT][hapmap]
rs9965685	0.84[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060732	chr18:30267156-30304435	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1062187	chr18:30267156-30306081	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1056335	chr18:30267904-30305840	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1059928	chr18:30267904-30306081	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1062522	chr18:30268383-30306081	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30252200-30277200	Weak transcription	Spleen	Spleen
2	chr18:30253200-30275400	Strong transcription	Primary B cells from cord blood	blood
3	chr18:30260400-30282200	Weak transcription	Fetal Kidney	kidney
4	chr18:30267200-30268600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr18:30267200-30268600	Weak transcription	HepG2	liver
6	chr18:30267400-30270800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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