Variant report

Variant	rs809570
Chromosome Location	chr6:129060983-129060984
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1508444	0.83[AMR][1000 genomes]
rs1508446	1.00[AMR][1000 genomes]
rs1876579	1.00[AMR][1000 genomes]
rs1911787	1.00[AMR][1000 genomes]
rs774278	0.83[AMR][1000 genomes]
rs774279	1.00[AMR][1000 genomes]
rs7745581	1.00[AMR][1000 genomes]
rs7763496	1.00[AMR][1000 genomes]
rs812854	1.00[EUR][1000 genomes]
rs9388664	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830801	chr6:128878436-129064667	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1030330	chr6:129008538-129095108	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:129045200-129062000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:129058400-129064000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:129058400-129064000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:129058400-129065800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:129058600-129061600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:129058600-129062200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:129058600-129063800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:129059200-129061000	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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