Variant report

Variant	rs8108360
Chromosome Location	chr19:36391968-36391969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr19:36389396-36392037	SK-N-SH	brain:	n/a	n/a
2	ZNF384	chr19:36391183-36391987	K562	blood:	n/a	n/a
3	POLR2A	chr19:36390325-36392067	HepG2	liver:	n/a	n/a
4	MTA3	chr19:36391934-36392600	GM12878	blood:	n/a	n/a
5	POLR2A	chr19:36390492-36392028	Raji	blood:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:36390580..36392436-chr19:36485968..36488161,2	K562	blood:
2	chr19:36134320..36136453-chr19:36390020..36392248,2	MCF-7	breast:
3	chr19:36389776..36392991-chr19:36393581..36401271,10	K562	blood:
4	chr19:36334818..36337477-chr19:36389378..36392350,2	MCF-7	breast:
5	chr19:36361275..36362791-chr19:36390518..36392697,2	K562	blood:
6	chr19:36379784..36382461-chr19:36387954..36392218,4	MCF-7	breast:
7	chr19:36390062..36392033-chr19:36425677..36427196,2	MCF-7	breast:
8	chr19:36390133..36392611-chr19:36392789..36396319,5	MCF-7	breast:
9	chr19:36359272..36362126-chr19:36389056..36392231,3	MCF-7	breast:
10	chr19:36391220..36392948-chr19:36631072..36632593,2	MCF-7	breast:

No data

Variant related genes	Relation type
NFKBID	TF binding region
HCST	TF binding region
ENSG00000105290	Chromatin interaction
ENSG00000126264	Chromatin interaction
ENSG00000105672	Chromatin interaction
ENSG00000126243	Chromatin interaction
ENSG00000126247	Chromatin interaction
ENSG00000205138	Chromatin interaction
ENSG00000011600	Chromatin interaction
ENSG00000167604	Chromatin interaction
ENSG00000161270	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11878547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16960862	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17173033	0.83[ASN][1000 genomes]
rs1802029	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs230260	0.83[ASN][1000 genomes]
rs33964243	1.00[ASN][1000 genomes]
rs376240	0.83[ASN][1000 genomes]
rs56264349	0.83[ASN][1000 genomes]
rs58422001	0.91[ASN][1000 genomes]
rs7251744	0.90[ASN][1000 genomes]
rs7251879	0.91[ASN][1000 genomes]
rs7252902	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7253040	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7253826	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7254113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7258154	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7258214	0.90[ASN][1000 genomes]
rs7258909	0.90[ASN][1000 genomes]
rs8105153	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8106480	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8106495	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8108459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8110231	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8111740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8113524	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8113704	0.88[ASN][1000 genomes]
rs879407	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911638	chr19:36265508-36537959	Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
4	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
5	esv1831737	chr19:36324324-36690874	Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
6	nsv833812	chr19:36331913-36507594	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv833813	chr19:36341181-36499431	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36388600-36392000	Active TSS	Rectal Smooth Muscle	rectum
2	chr19:36389000-36392000	Active TSS	Brain Angular Gyrus	brain
3	chr19:36389000-36392000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr19:36389000-36392000	Active TSS	NHLF	lung
5	chr19:36389200-36392000	Active TSS	H1 Cell Line	embryonic stem cell
6	chr19:36389200-36392000	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr19:36389200-36392000	Flanking Active TSS	Placenta	Placenta
8	chr19:36389200-36392200	Active TSS	Right Atrium	heart
9	chr19:36389400-36392000	Active TSS	H9 Cell Line	embryonic stem cell
10	chr19:36389400-36392000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr19:36389400-36392000	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr19:36389400-36392000	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr19:36389400-36392000	Active TSS	Primary T cells from cord blood	blood
14	chr19:36389400-36392000	Active TSS	HSMMtube	muscle
15	chr19:36389600-36392000	Active TSS	Primary T killer memory cells from peripheral blood	blood
16	chr19:36389600-36392000	Active TSS	Fetal Kidney	kidney
17	chr19:36389600-36392000	Active TSS	A549	lung
18	chr19:36389600-36392000	Active TSS	GM12878-XiMat	blood
19	chr19:36389600-36392200	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr19:36389600-36392200	Active TSS	Colon Smooth Muscle	Colon
21	chr19:36389600-36392200	Active TSS	Duodenum Mucosa	Duodenum
22	chr19:36389800-36392000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr19:36389800-36392200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr19:36390000-36392600	Active TSS	Colonic Mucosa	Colon
25	chr19:36390200-36392000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr19:36390200-36392000	Active TSS	Rectal Mucosa Donor 31	rectum
27	chr19:36390400-36392000	Active TSS	Brain Substantia Nigra	brain
28	chr19:36390400-36392000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr19:36390400-36392000	Active TSS	HUVEC	blood vessel
30	chr19:36390800-36395400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr19:36391000-36392000	Flanking Active TSS	Stomach Smooth Muscle	stomach
32	chr19:36391000-36392200	Flanking Active TSS	Dnd41	blood
33	chr19:36391000-36395000	Flanking Active TSS	Primary hematopoietic stem cells	blood
34	chr19:36391400-36392000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr19:36391400-36392000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr19:36391400-36392000	Enhancers	Fetal Brain Male	brain
37	chr19:36391400-36392400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr19:36391600-36392000	Flanking Active TSS	Primary B cells from peripheral blood	blood
39	chr19:36391600-36392000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr19:36391600-36392000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
41	chr19:36391600-36392000	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
42	chr19:36391600-36392400	Enhancers	Fetal Heart	heart
43	chr19:36391600-36392600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
44	chr19:36391600-36393000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr19:36391600-36393200	Weak transcription	Esophagus	oesophagus
46	chr19:36391600-36393200	Weak transcription	Lung	lung
47	chr19:36391600-36394400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr19:36391600-36394400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr19:36391600-36394400	Weak transcription	Gastric	stomach
50	chr19:36391600-36394400	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links