Variant report

Variant	rs8110922
Chromosome Location	chr19:42971322-42971323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10401178	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10402245	1.00[TSI][hapmap]
rs10402853	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10404589	1.00[CEU][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10405037	0.90[AMR][1000 genomes]
rs10405152	1.00[CEU][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10405179	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10405410	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap]
rs10406227	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10408822	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10412074	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10412173	0.90[AMR][1000 genomes]
rs10412594	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10414396	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10415284	0.90[AMR][1000 genomes]
rs10416108	1.00[CEU][hapmap]
rs10418090	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10418997	0.83[AFR][1000 genomes]
rs10419543	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10420773	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs10422191	0.83[AFR][1000 genomes]
rs10423227	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10423370	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10424206	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs10425199	0.90[AMR][1000 genomes]
rs10425666	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10426304	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11878959	1.00[CEU][hapmap]
rs11878991	1.00[CEU][hapmap]
rs11880554	0.94[ASW][hapmap];1.00[CEU][hapmap];0.87[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs11880876	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11881583	1.00[CEU][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11882291	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11882701	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11883406	1.00[CEU][hapmap]
rs11883425	1.00[CEU][hapmap]
rs13343840	0.83[AFR][1000 genomes]
rs13345659	1.00[TSI][hapmap]
rs13346522	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs16975750	1.00[TSI][hapmap]
rs16975787	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16975799	0.88[ASW][hapmap];1.00[CEU][hapmap];0.85[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16975815	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16975862	0.83[AFR][1000 genomes]
rs28403155	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28425201	0.82[AFR][1000 genomes]
rs28433890	1.00[AMR][1000 genomes]
rs28602626	0.95[AMR][1000 genomes]
rs28625452	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28635141	0.95[AMR][1000 genomes]
rs28660279	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs41348545	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41381546	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41421250	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs57018456	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58050143	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58162305	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58702905	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60747186	0.85[AMR][1000 genomes]
rs61388144	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs6509015	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6509019	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap]
rs7245385	1.00[TSI][hapmap]
rs7246161	1.00[CEU][hapmap]
rs7246591	1.00[CEU][hapmap]
rs7247278	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7248907	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7249304	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7250501	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7251638	1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap]
rs7252874	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7253634	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7256850	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs7258854	1.00[CEU][hapmap]
rs7259335	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558492	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73558498	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73560408	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs8101378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8104731	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8105525	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs8106836	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs8107720	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8108992	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs8109086	0.90[AFR][1000 genomes]
rs8110904	1.00[YRI][hapmap];0.89[AMR][1000 genomes]
rs8111171	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs8111468	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs8112593	0.90[AMR][1000 genomes]
rs8112915	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs8113154	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs8113448	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9749434	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs9916999	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9917002	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42960200-42975600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:42960400-42974200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr19:42965800-42972400	Enhancers	Primary B cells from peripheral blood	blood
4	chr19:42967200-42972400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr19:42967200-42972400	Weak transcription	Esophagus	oesophagus
6	chr19:42967400-42972400	Weak transcription	Fetal Intestine Small	intestine
7	chr19:42969000-42972200	Enhancers	Primary B cells from cord blood	blood
8	chr19:42969400-42971400	Flanking Active TSS	GM12878-XiMat	blood
9	chr19:42969400-42972000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr19:42969400-42973000	Enhancers	HepG2	liver
11	chr19:42969400-42975200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr19:42969800-42971400	Enhancers	Duodenum Mucosa	Duodenum
13	chr19:42969800-42971800	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr19:42970000-42971600	Enhancers	Brain Cingulate Gyrus	brain
15	chr19:42970000-42971600	Enhancers	Lung	lung
16	chr19:42970000-42971600	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr19:42970000-42971800	Enhancers	Adipose Nuclei	Adipose
18	chr19:42970000-42972600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr19:42970000-42972600	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr19:42970000-42972600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr19:42970000-42974600	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr19:42970200-42971400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr19:42970200-42971600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr19:42970200-42971600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr19:42970200-42971600	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr19:42970200-42971600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr19:42970200-42971600	Enhancers	Brain Hippocampus Middle	brain
28	chr19:42970200-42971600	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr19:42970200-42971600	Enhancers	Spleen	Spleen
30	chr19:42970200-42971800	Enhancers	Brain Angular Gyrus	brain
31	chr19:42970200-42971800	Enhancers	Brain Substantia Nigra	brain
32	chr19:42970200-42972000	Enhancers	Primary hematopoietic stem cells	blood
33	chr19:42970200-42972600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr19:42970200-42972600	Enhancers	Muscle Satellite Cultured Cells	--
35	chr19:42970200-42972600	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr19:42970200-42972800	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr19:42970200-42972800	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr19:42970400-42971600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr19:42970400-42971600	Enhancers	Fetal Intestine Large	intestine
40	chr19:42970400-42971600	Enhancers	Hela-S3	cervix
41	chr19:42970400-42972400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr19:42970400-42973000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr19:42970400-42973600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr19:42970600-42971400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr19:42970600-42973000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr19:42970600-42976400	Enhancers	HSMM	muscle
47	chr19:42970800-42971400	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr19:42970800-42971600	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr19:42970800-42972400	Weak transcription	Fetal Muscle Leg	muscle
50	chr19:42970800-42972600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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