Variant report

Variant	rs8178024
Chromosome Location	chr8:48847705-48847706
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:48846197..48849935-chr8:48851023..48856886,6	K562	blood:
2	chr8:48847487..48849935-chr8:48851107..48853114,2	K562	blood:
3	chr8:48840672..48844205-chr8:48845279..48848324,4	K562	blood:
4	chr8:48845787..48848384-chr8:48854733..48856494,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253729	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10093943	0.91[AFR][1000 genomes]
rs10095249	0.91[AFR][1000 genomes]
rs10097429	0.91[AFR][1000 genomes]
rs11987748	0.91[AFR][1000 genomes]
rs11998483	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17287711	0.94[AFR][1000 genomes]
rs28488251	0.91[AFR][1000 genomes]
rs28542480	0.91[AFR][1000 genomes]
rs28699569	0.82[AFR][1000 genomes]
rs28701667	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28719542	0.94[AFR][1000 genomes]
rs28751111	0.91[AFR][1000 genomes]
rs28812773	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35590911	0.91[AFR][1000 genomes]
rs6473874	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6982040	1.00[AMR][1000 genomes]
rs6982203	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6984595	0.90[AFR][1000 genomes]
rs7002719	0.89[AFR][1000 genomes]
rs7819424	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7839604	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7841307	0.89[AFR][1000 genomes]
rs8177999	0.81[AFR][1000 genomes]
rs8178037	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8178117	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8178176	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8178185	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803608	chr8:48506628-48874811	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1021389	chr8:48700970-48880931	Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv539599	chr8:48700970-48880931	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv931032	chr8:48744329-49091359	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	esv2758156	chr8:48788293-49008014	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	esv2759611	chr8:48788293-49008014	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv427820	chr8:48788293-49008014	Strong transcription Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv831309	chr8:48815290-48977856	Strong transcription Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:48726400-48870400	Strong transcription	Primary T helper cells fromperipheralblood	blood
2	chr8:48730000-48871600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:48739600-48870600	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr8:48739800-48870400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr8:48785200-48859000	Strong transcription	Fetal Muscle Trunk	muscle
6	chr8:48793800-48870400	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr8:48793800-48870800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:48800600-48854000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:48814000-48853800	Strong transcription	A549	lung
10	chr8:48815400-48851600	Weak transcription	Stomach Mucosa	stomach
11	chr8:48820000-48857400	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr8:48820000-48871000	Strong transcription	Fetal Intestine Large	intestine
13	chr8:48820200-48853400	Strong transcription	Fetal Thymus	thymus
14	chr8:48820400-48854800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:48820400-48870000	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr8:48820400-48870000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:48822400-48870800	Strong transcription	Liver	Liver
18	chr8:48822600-48860000	Strong transcription	Hela-S3	cervix
19	chr8:48822600-48870600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr8:48822600-48870800	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr8:48823200-48854600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr8:48823200-48870600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:48824200-48870200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr8:48824800-48870000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr8:48826600-48848200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr8:48830600-48857400	Strong transcription	HSMM	muscle
27	chr8:48830800-48857200	Strong transcription	Duodenum Mucosa	Duodenum
28	chr8:48831400-48859000	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr8:48833800-48849400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr8:48833800-48870800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr8:48833800-48870800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr8:48834000-48853400	Strong transcription	Placenta	Placenta
33	chr8:48834000-48856800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr8:48834000-48869200	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr8:48834000-48869400	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr8:48834000-48869400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr8:48834400-48870200	Strong transcription	Primary B cells from peripheral blood	blood
38	chr8:48834600-48853200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr8:48834800-48849200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr8:48835200-48849200	Strong transcription	Fetal Lung	lung
41	chr8:48835400-48870200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr8:48835800-48871600	Strong transcription	Primary B cells from cord blood	blood
43	chr8:48836000-48856800	Strong transcription	Osteobl	bone
44	chr8:48836400-48853800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr8:48836400-48854600	Weak transcription	Small Intestine	intestine
46	chr8:48836600-48853800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr8:48836800-48853800	Strong transcription	HMEC	breast
48	chr8:48837400-48860400	Strong transcription	Primary hematopoietic stem cells	blood
49	chr8:48838800-48854000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr8:48838800-48854000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links