Variant report

Variant	rs8180798
Chromosome Location	chr7:147680902-147680903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147680486..147683075-chr7:147685305..147687818,2	MCF-7	breast:
2	chr7:147672050..147673576-chr7:147678851..147681091,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10227736	0.93[YRI][hapmap]
rs10263964	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10452891	0.81[YRI][hapmap]
rs10500194	0.93[YRI][hapmap]
rs12532080	0.80[YRI][hapmap]
rs12532103	0.93[YRI][hapmap]
rs13225250	0.93[YRI][hapmap]
rs13225815	0.93[YRI][hapmap]
rs13228704	0.93[YRI][hapmap]
rs13238527	0.93[YRI][hapmap]
rs17170769	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17432209	0.96[CEU][hapmap]
rs1997530	0.96[CEU][hapmap]
rs2141954	0.96[CEU][hapmap]
rs2178768	0.96[CEU][hapmap]
rs2204924	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs2246970	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs2707581	0.92[CEU][hapmap]
rs2707585	0.96[CEU][hapmap]
rs2708278	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs2708285	0.82[JPT][hapmap]
rs28716147	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4726900	0.82[YRI][hapmap]
rs62471122	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6947287	0.93[YRI][hapmap]
rs7797584	0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889399	chr7:147643923-147712471	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv889400	chr7:147650411-147712471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147679800-147681000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:147680800-147681400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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