Variant report

Variant	rs818622
Chromosome Location	chr7:105210846-105210847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:105210776-105211214	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105171919..105174630-chr7:105210042..105212382,2	K562	blood:
2	chr7:105171171..105172915-chr7:105209648..105211277,2	K562	blood:

Variant related genes	Relation type
ENSG00000272604	TF binding region
ENSG00000135249	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1706922	1.00[EUR][1000 genomes]
rs1721504	1.00[EUR][1000 genomes]
rs59611877	1.00[EUR][1000 genomes]
rs6954598	1.00[EUR][1000 genomes]
rs6958303	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6958926	1.00[EUR][1000 genomes]
rs6972569	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6977226	0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73720103	1.00[EUR][1000 genomes]
rs7784501	1.00[EUR][1000 genomes]
rs7805216	1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs864687	0.82[YRI][hapmap]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105174000-105212200	Weak transcription	Fetal Heart	heart
2	chr7:105174200-105213800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:105174600-105213200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:105175400-105211000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:105183600-105211000	Weak transcription	Small Intestine	intestine
6	chr7:105188000-105214200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:105193200-105221400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:105193200-105221600	Weak transcription	Aorta	Aorta
9	chr7:105194600-105211000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:105196000-105221600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr7:105196200-105212200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:105199400-105221600	Weak transcription	Pancreas	Pancrea
13	chr7:105200800-105211000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:105201000-105217600	Weak transcription	HSMMtube	muscle
15	chr7:105201000-105221600	Weak transcription	Colonic Mucosa	Colon
16	chr7:105202000-105221600	Weak transcription	Esophagus	oesophagus
17	chr7:105205200-105212600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:105205400-105221400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr7:105205600-105221600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr7:105206200-105221600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr7:105206200-105221600	Weak transcription	HUVEC	blood vessel
22	chr7:105206400-105212600	Weak transcription	Fetal Brain Male	brain
23	chr7:105206400-105218200	Weak transcription	Colon Smooth Muscle	Colon
24	chr7:105206400-105221400	Weak transcription	Brain Hippocampus Middle	brain
25	chr7:105206400-105221600	Weak transcription	Fetal Kidney	kidney
26	chr7:105206600-105218200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr7:105207000-105221400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr7:105207000-105221400	Weak transcription	Fetal Brain Female	brain
29	chr7:105207000-105221800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr7:105207600-105211000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr7:105208200-105221600	Weak transcription	HepG2	liver
32	chr7:105208400-105212000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr7:105208400-105214400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr7:105208400-105221400	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr7:105208400-105221600	Weak transcription	NHDF-Ad	bronchial
36	chr7:105208600-105211600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr7:105208600-105211600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr7:105208600-105212400	Weak transcription	Spleen	Spleen
39	chr7:105208600-105213000	Weak transcription	Placenta	Placenta
40	chr7:105208600-105213400	Weak transcription	HMEC	breast
41	chr7:105208600-105214000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr7:105208600-105217600	Weak transcription	Fetal Lung	lung
43	chr7:105208600-105218800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr7:105208600-105219600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr7:105208600-105221200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr7:105208600-105221400	Weak transcription	Brain Germinal Matrix	brain
47	chr7:105208600-105221400	Weak transcription	NH-A	brain
48	chr7:105208600-105221600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr7:105208600-105221600	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr7:105208600-105221600	Weak transcription	Rectal Mucosa Donor 31	rectum

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