Variant report

Variant	rs821313
Chromosome Location	chr9:140506209-140506210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:152)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:152 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr9:140505978-140507161	ECC-1	luminal epithelium:	n/a	n/a
2	FOSL2	chr9:140506117-140507137	A549	lung:	n/a	n/a
3	YY1	chr9:140506181-140507016	HCT-116	colon:	n/a	chr9:140506452-140506464
4	POLR2A	chr9:140506142-140506376	H1-hESC	embryonic stem cell:	n/a	n/a
5	MAX	chr9:140505823-140507316	A549	lung:	n/a	n/a
6	POLR2A	chr9:140505909-140509423	GM12892	blood:	n/a	n/a
7	SMC3	chr9:140506200-140507306	Hela-S3	cervix:	n/a	n/a
8	MYC	chr9:140506036-140507094	Hela-S3	cervix:	n/a	n/a
9	USF1	chr9:140505365-140507489	HCT-116	colon:	n/a	chr9:140506419-140506430
10	POLR2A	chr9:140506021-140507542	Hela-S3	cervix:	n/a	n/a
11	PBX3	chr9:140506067-140507795	SK-N-SH	brain:	n/a	n/a
12	POLR2A	chr9:140505373-140510623	K562	blood:	n/a	n/a
13	HDAC2	chr9:140506138-140507306	MCF-7	breast:	n/a	n/a
14	POLR2A	chr9:140506191-140508752	PBDE	blood:	n/a	n/a
15	POLR2A	chr9:140506120-140506693	GM12891	blood:	n/a	n/a
16	MAX	chr9:140505988-140507115	A549	lung:	n/a	n/a
17	MAZ	chr9:140506173-140507060	Hela-S3	cervix:	n/a	n/a
18	CCNT2	chr9:140506201-140506432	K562	blood:	n/a	n/a
19	MAX	chr9:140506069-140507167	Hela-S3	cervix:	n/a	n/a
20	USF1	chr9:140506195-140506618	K562	blood:	n/a	chr9:140506419-140506430
21	TCF12	chr9:140506178-140508332	A549	lung:	n/a	n/a
22	TEAD4	chr9:140505348-140507490	ECC-1	luminal epithelium:	n/a	n/a
23	MAX	chr9:140506059-140507065	Hela-S3	cervix:	n/a	n/a
24	NR3C1	chr9:140506114-140506521	ECC-1	luminal epithelium:	n/a	n/a
25	MAX	chr9:140505415-140507447	ECC-1	luminal epithelium:	n/a	n/a
26	MAX	chr9:140505888-140507597	MCF-7	breast:	n/a	n/a
27	USF1	chr9:140506177-140507055	A549	lung:	n/a	chr9:140506419-140506430
28	POLR2A	chr9:140506005-140509069	GM12878	blood:	n/a	n/a
29	POLR2A	chr9:140505367-140508286	Hela-S3	cervix:	n/a	n/a
30	POLR2A	chr9:140505430-140508680	MCF10A-Er-Src	breast:	n/a	n/a
31	USF1	chr9:140506124-140507027	A549	lung:	n/a	chr9:140506419-140506430
32	FOXM1	chr9:140506030-140507207	ECC-1	luminal epithelium:	n/a	n/a
33	FOSL1	chr9:140506186-140506624	K562	blood:	n/a	chr9:140506403-140506414
34	ZNF217	chr9:140506192-140507092	MCF-7	breast:	n/a	n/a
35	FOXM1	chr9:140505968-140507276	ECC-1	luminal epithelium:	n/a	n/a
36	MAX	chr9:140506183-140506262	NB4	blood:	n/a	n/a
37	POLR2A	chr9:140505849-140510618	A549	lung:	n/a	n/a
38	POLR2A	chr9:140506019-140510463	Hela-S3	cervix:	n/a	n/a
39	ELF1	chr9:140505939-140507484	MCF-7	breast:	n/a	n/a
40	MYC	chr9:140506138-140506564	K562	blood:	n/a	n/a
41	YY1	chr9:140506195-140506585	GM12892	blood:	n/a	chr9:140506452-140506464
42	POLR2A	chr9:140505860-140510540	A549	lung:	n/a	n/a
43	POLR2A	chr9:140506030-140509030	A549	lung:	n/a	n/a
44	SMARCB1	chr9:140505999-140507972	Hela-S3	cervix:	n/a	n/a
45	FOSL2	chr9:140506166-140507164	SK-N-SH	brain:	n/a	n/a
46	USF1	chr9:140506174-140506626	SK-N-SH_RA	brain:	n/a	chr9:140506419-140506430
47	PML	chr9:140506162-140507264	MCF-7	breast:	n/a	n/a
48	JUND	chr9:140506138-140507875	A549	lung:	n/a	chr9:140506403-140506414
49	NFATC1	chr9:140506064-140506650	GM12878	blood:	n/a	n/a
50	RCOR1	chr9:140506203-140507134	Hela-S3	cervix:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:1619677..1620447-chr9:140505862..140506714,2	Hela-S3	cervix:
2	chr9:140441799..140446269-chr9:140505086..140508400,5	MCF-7	breast:
3	chr17:73775349..73776145-chr9:140506201..140506865,3	Hela-S3	cervix:
4	chr9:140482399..140489274-chr9:140503366..140510626,23	MCF-7	breast:
5	chr15:80213455..80216232-chr9:140505941..140507985,2	MCF-7	breast:
6	chr9:140117969..140119690-chr9:140505138..140507974,2	MCF-7	breast:
7	chr9:140444528..140447263-chr9:140504669..140508200,5	MCF-7	breast:
8	chr9:140469278..140479132-chr9:140503165..140510984,27	MCF-7	breast:
9	chr17:8059167..8059999-chr9:140506144..140506746,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ARRDC1	TF binding region
ENSG00000148399	Chromatin interaction
ENSG00000197191	Chromatin interaction
ENSG00000259332	Chromatin interaction
ENSG00000179094	Chromatin interaction
ENSG00000180953	Chromatin interaction
ENSG00000257028	Chromatin interaction
ENSG00000167716	Chromatin interaction
ENSG00000130653	Chromatin interaction
ENSG00000165724	Chromatin interaction
ENSG00000132475	Chromatin interaction
ENSG00000259642	Chromatin interaction
ENSG00000182154	Chromatin interaction

Extended variants
information (count: 154 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10110	0.82[CHB][hapmap];0.94[CHD][hapmap];0.84[MEX][hapmap]
rs10120250	0.86[AMR][1000 genomes]
rs10217292	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1045777	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[ASN][1000 genomes]
rs10732688	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs10780178	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10780179	0.84[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10780180	0.82[CHB][hapmap]
rs10780181	0.81[AMR][1000 genomes]
rs10780182	0.81[AMR][1000 genomes]
rs10780183	1.00[CHB][hapmap];0.83[CHD][hapmap];0.92[MEX][hapmap];0.84[AMR][1000 genomes]
rs10780184	1.00[CHB][hapmap]
rs10867031	0.85[GIH][hapmap];0.95[MEX][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10867034	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10867035	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10867038	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10867039	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10867040	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10867049	0.81[AMR][1000 genomes]
rs10867050	1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs10867051	1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs10867053	0.84[AMR][1000 genomes]
rs10867054	0.81[AMR][1000 genomes]
rs10867057	0.89[JPT][hapmap]
rs1105221	0.94[CHD][hapmap];0.80[MEX][hapmap]
rs11137135	0.82[CHB][hapmap];0.94[CHD][hapmap];0.84[MEX][hapmap];0.80[AMR][1000 genomes]
rs11137136	0.84[AMR][1000 genomes]
rs11137140	1.00[CHB][hapmap]
rs11137141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.99[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11137142	0.99[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11137144	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11137145	0.85[AMR][1000 genomes]
rs11137148	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11137155	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11137156	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11137157	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11137158	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11137161	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11137163	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11137167	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11137169	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11137172	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes]
rs11137173	0.86[AMR][1000 genomes]
rs11137177	0.82[AMR][1000 genomes]
rs11137178	0.84[AMR][1000 genomes]
rs12238721	0.84[EUR][1000 genomes]
rs12551649	0.82[AMR][1000 genomes]
rs12683290	0.82[CHB][hapmap];0.84[CHD][hapmap];0.88[MEX][hapmap]
rs12686658	1.00[JPT][hapmap]
rs13286765	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13287726	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13291780	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13296028	1.00[CHB][hapmap];0.89[CHD][hapmap];0.92[MEX][hapmap];0.86[AMR][1000 genomes]
rs17496354	1.00[CHB][hapmap];0.92[MEX][hapmap];0.84[AMR][1000 genomes]
rs1776776	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1891628	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.88[MEX][hapmap];0.86[AMR][1000 genomes]
rs2014103	0.84[AMR][1000 genomes]
rs2094623	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes]
rs2257839	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes]
rs2282020	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2297004	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.88[MEX][hapmap];0.86[AMR][1000 genomes]
rs2297005	0.86[AMR][1000 genomes]
rs2297006	0.86[AMR][1000 genomes]
rs2353078	0.92[AMR][1000 genomes]
rs2480116	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2488588	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2501550	0.92[ASN][1000 genomes]
rs2501552	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2501553	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2501554	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2501556	1.00[CHB][hapmap]
rs2501559	1.00[CHB][hapmap]
rs2501567	1.00[CHB][hapmap];0.85[CHD][hapmap];0.80[MEX][hapmap];0.83[ASN][1000 genomes]
rs2501568	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2501570	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2987618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2987621	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34249205	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35374891	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812497	0.88[JPT][hapmap]
rs3849856	1.00[CHB][hapmap];0.92[MEX][hapmap];0.83[AMR][1000 genomes]
rs3895387	1.00[CHB][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes]
rs4246177	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4494021	0.81[ASN][1000 genomes]
rs4962227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4962241	0.99[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4979638	0.81[AMR][1000 genomes]
rs4979651	0.82[AMR][1000 genomes]
rs4979653	0.84[AMR][1000 genomes]
rs4979654	0.82[AMR][1000 genomes]
rs4979656	0.81[AMR][1000 genomes]
rs4979657	1.00[CHB][hapmap];0.92[MEX][hapmap];0.81[AMR][1000 genomes]
rs66620625	0.81[ASN][1000 genomes]
rs67089520	0.86[AMR][1000 genomes]
rs67499662	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67789600	0.86[AMR][1000 genomes]
rs7020339	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7024179	1.00[CHB][hapmap];0.83[CHD][hapmap];0.88[MEX][hapmap]
rs7043932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71510835	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71510836	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7389975	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8181211	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs821317	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs863701	0.82[CHB][hapmap];0.84[CHD][hapmap];0.88[MEX][hapmap];0.81[AMR][1000 genomes]
rs864747	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9410034	0.82[AMR][1000 genomes]
rs9410111	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9410112	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9410114	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs950078	0.82[CHB][hapmap];0.94[CHD][hapmap];0.88[MEX][hapmap]
rs975978	1.00[CHB][hapmap];0.83[CHD][hapmap];0.80[MEX][hapmap]
rs9777268	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:41 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
2	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
3	nsv531664	chr9:140110329-140725056	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
4	nsv531654	chr9:140110329-141033187	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	281 gene(s)	inside rSNPs	diseases
5	nsv1047563	chr9:140219047-140560852	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
6	nsv540357	chr9:140219047-140560852	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
7	nsv531602	chr9:140240417-140535223	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	96 gene(s)	inside rSNPs	diseases
8	nsv932633	chr9:140240417-141053535	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
9	nsv1035524	chr9:140251014-140751633	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
10	nsv1053628	chr9:140260666-141005637	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
11	nsv534215	chr9:140286134-141008915	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	n/a
12	nsv1035388	chr9:140306746-140654768	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	96 gene(s)	inside rSNPs	n/a
13	nsv831762	chr9:140338779-140514107	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	n/a
14	nsv1039672	chr9:140343466-140707505	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	85 gene(s)	inside rSNPs	n/a
15	nsv540358	chr9:140343466-140707505	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	85 gene(s)	inside rSNPs	n/a
16	nsv1041512	chr9:140350404-140612859	Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	n/a
17	nsv540359	chr9:140350404-140612859	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	n/a
18	nsv616022	chr9:140372570-140523429	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	n/a
19	nsv616023	chr9:140372570-140602887	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	n/a
20	nsv531603	chr9:140378700-140590977	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	n/a
21	nsv531665	chr9:140378700-141073897	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	n/a
22	nsv868924	chr9:140407572-141053525	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	n/a
23	nsv1039933	chr9:140408112-141005637	Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	n/a
24	nsv531666	chr9:140409395-141015925	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	n/a
25	nsv616024	chr9:140414410-140536098	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	n/a
26	nsv831763	chr9:140439831-140614021	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	n/a
27	nsv540364	chr9:140447860-140514807	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	n/a
28	esv3398333	chr9:140451462-140814795	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	n/a
29	nsv1052036	chr9:140452641-141018985	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	n/a
30	nsv540365	chr9:140452641-141018985	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	n/a
31	nsv949702	chr9:140466816-141027939	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	n/a
32	nsv531667	chr9:140468821-140936261	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	n/a
33	nsv894665	chr9:140469600-140523429	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	n/a
34	nsv894666	chr9:140470564-140518576	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	n/a
35	nsv894667	chr9:140473729-140518576	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	n/a
36	nsv894668	chr9:140477812-140518576	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	n/a
37	nsv531668	chr9:140492807-140986221	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	n/a
38	nsv894669	chr9:140498789-140518576	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	39 gene(s)	inside rSNPs	n/a
39	nsv894670	chr9:140503095-140526439	Genic enhancers Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	36 gene(s)	inside rSNPs	n/a
40	nsv894671	chr9:140505476-140519654	Genic enhancers Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	35 gene(s)	inside rSNPs	n/a
41	nsv894672	chr9:140506209-140518576	Genic enhancers Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	35 gene(s)	inside rSNPs	n/a

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs821313	C9orf37	cis	cerebellum	SCAN
rs821313	ARRDC1	cis	parietal	SCAN
rs821313	ENTPD2	cis	cerebellum	SCAN
rs821313	ARRDC1	cis	cerebellum	SCAN
rs821313	EHMT1	cis	Whole Blood	GTEx
rs821313	PHPT1	cis	parietal	SCAN

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140501400-140508400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:140501600-140506400	Weak transcription	HUVEC	blood vessel
3	chr9:140501600-140507800	Weak transcription	Aorta	Aorta
4	chr9:140501600-140508200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:140501800-140509400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:140501800-140510000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr9:140501800-140512200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:140502000-140507800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:140502000-140508600	Weak transcription	Ovary	ovary
10	chr9:140502200-140506600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:140502200-140507600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:140502200-140507600	Weak transcription	Brain Germinal Matrix	brain
13	chr9:140502200-140507800	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:140502200-140507800	Weak transcription	Dnd41	blood
15	chr9:140502200-140508000	Weak transcription	Brain Angular Gyrus	brain
16	chr9:140502200-140508400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr9:140502400-140507200	Weak transcription	Fetal Brain Female	brain
18	chr9:140502400-140512000	Weak transcription	Fetal Brain Male	brain
19	chr9:140503000-140507600	Weak transcription	Primary T cells from cord blood	blood
20	chr9:140503200-140508200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:140503400-140507800	Weak transcription	Fetal Thymus	thymus
22	chr9:140503600-140506400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr9:140503600-140507600	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr9:140503600-140507800	Weak transcription	Primary B cells from cord blood	blood
25	chr9:140503600-140507800	Weak transcription	Brain Anterior Caudate	brain
26	chr9:140503600-140507800	Weak transcription	Thymus	Thymus
27	chr9:140503600-140508000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr9:140504200-140507000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:140504200-140508000	Enhancers	Placenta	Placenta
30	chr9:140504400-140507400	Weak transcription	Fetal Stomach	stomach
31	chr9:140505200-140506400	Enhancers	Fetal Intestine Large	intestine
32	chr9:140505200-140508000	Enhancers	Lung	lung
33	chr9:140505400-140506800	Enhancers	Stomach Smooth Muscle	stomach
34	chr9:140505400-140507200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr9:140505400-140507200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr9:140505400-140507200	Enhancers	Fetal Muscle Leg	muscle
37	chr9:140505400-140507200	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr9:140505400-140507400	Enhancers	Primary T cells fromperipheralblood	blood
39	chr9:140505400-140507600	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr9:140505400-140507800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr9:140505400-140508000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr9:140505400-140508000	Flanking Active TSS	Hela-S3	cervix
43	chr9:140505400-140509800	Genic enhancers	Gastric	stomach
44	chr9:140505600-140506400	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr9:140505600-140506600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr9:140505600-140506800	Enhancers	Brain Cingulate Gyrus	brain
47	chr9:140505600-140507000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr9:140505600-140507000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
49	chr9:140505600-140507000	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr9:140505600-140507200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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