Variant report

Variant	rs822517
Chromosome Location	chr1:155841726-155841727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:155836334..155839218-chr1:155841025..155842829,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RXFP4-3	chr1:155839565-155841887	NONHSAT006771

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12722806	0.86[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16837089	1.00[CHD][hapmap]
rs171168	1.00[CEU][hapmap]
rs1889531	0.86[ASW][hapmap];0.82[LWK][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs348200	1.00[ASW][hapmap]
rs4661150	1.00[AMR][1000 genomes]
rs6663312	1.00[CHB][hapmap]
rs822518	1.00[ASW][hapmap];0.82[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs864770	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155830000-155869000	Weak transcription	Gastric	stomach
2	chr1:155830400-155843800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:155830400-155843800	Weak transcription	Lung	lung
4	chr1:155830400-155865800	Weak transcription	Esophagus	oesophagus
5	chr1:155830600-155850200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr1:155830600-155866800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr1:155830800-155850400	Weak transcription	Adipose Nuclei	Adipose
8	chr1:155830800-155852000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr1:155831000-155848800	Weak transcription	Fetal Intestine Large	intestine
10	chr1:155831000-155849200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr1:155831000-155850000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:155831000-155851000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr1:155831000-155862600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr1:155831000-155862800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr1:155831000-155863000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr1:155831200-155862800	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr1:155831400-155859000	Weak transcription	HUVEC	blood vessel
18	chr1:155834600-155850200	Weak transcription	HSMM	muscle
19	chr1:155836200-155842000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:155836400-155866400	Weak transcription	Primary B cells from cord blood	blood
21	chr1:155837200-155843000	Weak transcription	Fetal Thymus	thymus
22	chr1:155837400-155841800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:155837400-155844400	Enhancers	Fetal Brain Male	brain
24	chr1:155837600-155863000	Weak transcription	Colonic Mucosa	Colon
25	chr1:155838000-155841800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr1:155838200-155841800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr1:155838200-155843400	Weak transcription	Osteobl	bone
28	chr1:155839000-155841800	Strong transcription	Fetal Intestine Small	intestine
29	chr1:155839800-155843400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr1:155840000-155842200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr1:155840000-155850200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr1:155840200-155842600	Enhancers	Fetal Muscle Leg	muscle
33	chr1:155840400-155841800	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr1:155840400-155842000	Enhancers	Right Atrium	heart
35	chr1:155840400-155842600	Enhancers	Fetal Muscle Trunk	muscle
36	chr1:155840400-155842800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr1:155840400-155850000	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr1:155840600-155841800	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr1:155840600-155841800	Enhancers	Right Ventricle	heart
40	chr1:155840800-155841800	Enhancers	HSMMtube	muscle
41	chr1:155840800-155842800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr1:155841000-155841800	Flanking Active TSS	Brain Angular Gyrus	brain
43	chr1:155841000-155841800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
44	chr1:155841000-155843000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr1:155841200-155841800	Flanking Active TSS	Brain Cingulate Gyrus	brain
46	chr1:155841200-155842200	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr1:155841200-155842800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr1:155841200-155842800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr1:155841200-155843800	Enhancers	Brain Substantia Nigra	brain
50	chr1:155841200-155849600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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