Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118186238..118188903-chr5:118190266..118193143,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10447237	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10447238	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10447266	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11241476	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12659444	0.80[EUR][1000 genomes]
rs13166967	0.85[EUR][1000 genomes]
rs17132673	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17144714	0.91[EUR][1000 genomes]
rs1864109	0.91[EUR][1000 genomes]
rs2081957	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2099092	0.96[EUR][1000 genomes]
rs2115301	0.93[EUR][1000 genomes]
rs2115302	0.96[EUR][1000 genomes]
rs2162888	0.96[EUR][1000 genomes]
rs3813297	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3813298	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs386288	0.87[AMR][1000 genomes]
rs406335	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4895347	0.80[EUR][1000 genomes]
rs4895353	0.89[EUR][1000 genomes]
rs4895354	0.89[EUR][1000 genomes]
rs55821851	0.91[EUR][1000 genomes]
rs55876313	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56004980	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs581887	0.92[AMR][1000 genomes]
rs62374075	0.93[AFR][1000 genomes]
rs635083	0.86[AMR][1000 genomes]
rs6870923	0.85[AFR][1000 genomes]
rs6881583	0.94[EUR][1000 genomes]
rs73234502	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73236920	0.93[EUR][1000 genomes]
rs7709381	0.97[EUR][1000 genomes]
rs7724403	0.83[AFR][1000 genomes]
rs849728	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv599562	chr5:118122504-118230640	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv882771	chr5:118170135-118230640	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv882772	chr5:118173127-118230640	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv882773	chr5:118175640-118241854	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118169600-118208600	Weak transcription	Aorta	Aorta
2	chr5:118189400-118209400	Weak transcription	Primary T cells from cord blood	blood
3	chr5:118189600-118205400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:118189600-118210600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:118190400-118191000	Weak transcription	Fetal Intestine Small	intestine

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