Variant report

Variant	rs822776
Chromosome Location	chr3:23021530-23021531
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs520582	0.87[AFR][1000 genomes]
rs535689	0.89[AFR][1000 genomes]
rs549968	0.81[AFR][1000 genomes]
rs822775	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23019200-23024800	Enhancers	Fetal Heart	heart
2	chr3:23019600-23022000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:23020600-23021600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr3:23021000-23022200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:23021000-23022400	Enhancers	HSMMtube	muscle
6	chr3:23021200-23022200	Enhancers	Placenta	Placenta
7	chr3:23021200-23022400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:23021200-23023000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr3:23021400-23021600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:23021400-23022000	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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