Variant report

Variant	rs824372
Chromosome Location	chr6:64033048-64033049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1525354	1.00[JPT][hapmap];0.85[MEX][hapmap]
rs1525355	0.85[MEX][hapmap]
rs1525357	0.85[MEX][hapmap]
rs1619321	0.83[ASN][1000 genomes]
rs1621804	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1625205	0.86[ASN][1000 genomes]
rs1711897	0.86[ASN][1000 genomes]
rs1711898	0.86[ASN][1000 genomes]
rs1711899	0.86[ASN][1000 genomes]
rs1711900	0.86[ASN][1000 genomes]
rs1711901	0.86[ASN][1000 genomes]
rs1711902	0.83[ASN][1000 genomes]
rs1711903	0.83[ASN][1000 genomes]
rs1711907	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1711912	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1711913	0.89[ASN][1000 genomes]
rs1711914	0.89[ASN][1000 genomes]
rs1711915	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1723499	0.85[MEX][hapmap]
rs1723502	0.86[ASN][1000 genomes]
rs1723504	0.86[ASN][1000 genomes]
rs1723506	0.86[ASN][1000 genomes]
rs1723507	0.86[ASN][1000 genomes]
rs1723508	0.86[ASN][1000 genomes]
rs1723531	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs1741782	0.86[ASN][1000 genomes]
rs1741783	0.86[ASN][1000 genomes]
rs1741784	0.87[ASN][1000 genomes]
rs1741787	0.89[ASN][1000 genomes]
rs1741788	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1741789	0.89[ASN][1000 genomes]
rs1741790	0.89[ASN][1000 genomes]
rs1741799	0.86[ASN][1000 genomes]
rs1779755	1.00[JPT][hapmap]
rs1779756	1.00[JPT][hapmap]
rs1779757	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs1779758	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1779760	0.86[ASN][1000 genomes]
rs1936532	0.83[ASN][1000 genomes]
rs2474908	0.86[ASN][1000 genomes]
rs2677021	0.86[ASN][1000 genomes]
rs2677022	1.00[JPT][hapmap]
rs2677023	1.00[JPT][hapmap];0.85[MEX][hapmap]
rs2677024	1.00[JPT][hapmap];0.85[MEX][hapmap]
rs2677027	0.85[MEX][hapmap]
rs2753069	0.86[ASN][1000 genomes]
rs4710426	0.86[ASN][1000 genomes]
rs482904	0.87[ASN][1000 genomes]
rs59943612	0.84[ASN][1000 genomes]
rs60505637	0.81[ASN][1000 genomes]
rs61229307	0.84[ASN][1000 genomes]
rs6454169	0.86[ASN][1000 genomes]
rs6933112	0.86[ASN][1000 genomes]
rs7381742	0.81[ASN][1000 genomes]
rs7382020	0.86[ASN][1000 genomes]
rs7757686	0.86[ASN][1000 genomes]
rs7758841	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7771677	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1025099	chr6:63514227-64055649	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1031548	chr6:64026862-64102045	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1030651	chr6:64028392-64102045	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64018200-64050800	Weak transcription	A549	lung
2	chr6:64032200-64034200	Enhancers	Fetal Brain Male	brain

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