Variant report

Variant	rs824388
Chromosome Location	chr6:64143575-64143576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs1010057	0.85[EUR][1000 genomes]
rs1320419	0.85[EUR][1000 genomes]
rs1404779	0.85[EUR][1000 genomes]
rs1464865	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1464866	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1525354	0.85[EUR][1000 genomes]
rs1525355	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1525357	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1608812	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1619321	0.85[EUR][1000 genomes]
rs1621804	0.85[EUR][1000 genomes]
rs1625205	0.85[EUR][1000 genomes]
rs1628449	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1631333	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711897	0.85[EUR][1000 genomes]
rs1711898	0.85[EUR][1000 genomes]
rs1711901	0.85[EUR][1000 genomes]
rs1711902	0.85[EUR][1000 genomes]
rs1711903	0.89[EUR][1000 genomes]
rs1711904	0.85[EUR][1000 genomes]
rs1711906	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1711912	0.85[EUR][1000 genomes]
rs1711913	0.85[EUR][1000 genomes]
rs1711914	0.85[EUR][1000 genomes]
rs1711915	0.85[EUR][1000 genomes]
rs1711918	0.85[EUR][1000 genomes]
rs1711919	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711927	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1711928	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1723497	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1723498	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1723499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1723500	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1723503	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1723504	0.81[EUR][1000 genomes]
rs1723508	0.81[EUR][1000 genomes]
rs1723527	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1723531	0.85[EUR][1000 genomes]
rs1741780	0.85[EUR][1000 genomes]
rs1741782	0.81[EUR][1000 genomes]
rs1741783	0.85[EUR][1000 genomes]
rs1741786	0.85[EUR][1000 genomes]
rs1741787	0.85[EUR][1000 genomes]
rs1741788	0.85[EUR][1000 genomes]
rs1741789	0.85[EUR][1000 genomes]
rs1741790	0.85[EUR][1000 genomes]
rs1741799	0.81[EUR][1000 genomes]
rs1741802	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741805	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1741810	0.85[EUR][1000 genomes]
rs1741813	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1779745	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1779749	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1779753	0.85[EUR][1000 genomes]
rs1779755	0.85[EUR][1000 genomes]
rs1779756	0.85[EUR][1000 genomes]
rs1779757	0.85[EUR][1000 genomes]
rs1779758	0.85[EUR][1000 genomes]
rs1779760	0.85[EUR][1000 genomes]
rs1857565	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1936532	0.85[EUR][1000 genomes]
rs2005098	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs2474908	0.85[EUR][1000 genomes]
rs2622277	1.00[CHB][hapmap]
rs2622291	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2622306	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2622308	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2677021	0.81[EUR][1000 genomes]
rs2677022	0.85[EUR][1000 genomes]
rs2677023	0.85[EUR][1000 genomes]
rs2677026	0.85[EUR][1000 genomes]
rs2677027	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs2677028	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2677029	0.85[EUR][1000 genomes]
rs2753064	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2753065	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2753069	0.85[EUR][1000 genomes]
rs2753070	0.85[EUR][1000 genomes]
rs2753071	0.85[EUR][1000 genomes]
rs2753072	0.85[EUR][1000 genomes]
rs2753073	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs2753074	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2800019	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2800020	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2800021	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2800024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2800025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2800029	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2800031	0.85[EUR][1000 genomes]
rs2800034	0.85[EUR][1000 genomes]
rs2800035	0.85[EUR][1000 genomes]
rs2800036	0.85[EUR][1000 genomes]
rs4710426	0.85[EUR][1000 genomes]
rs6454169	0.85[EUR][1000 genomes]
rs6933112	0.85[EUR][1000 genomes]
rs732948	0.85[EUR][1000 genomes]
rs7381742	0.81[EUR][1000 genomes]
rs7382020	0.85[EUR][1000 genomes]
rs7750785	0.85[EUR][1000 genomes]
rs7752941	0.85[EUR][1000 genomes]
rs7757686	0.85[EUR][1000 genomes]
rs7758841	0.85[EUR][1000 genomes]
rs7771677	0.85[EUR][1000 genomes]
rs7771703	0.84[EUR][1000 genomes]
rs824373	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs824374	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs824375	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs824376	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs824377	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs824378	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs824379	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs824380	0.85[EUR][1000 genomes]
rs824381	0.85[EUR][1000 genomes]
rs824383	0.85[EUR][1000 genomes]
rs824385	0.85[EUR][1000 genomes]
rs824387	0.85[EUR][1000 genomes]
rs824390	0.85[EUR][1000 genomes]
rs824391	0.85[EUR][1000 genomes]
rs824392	0.85[EUR][1000 genomes]
rs824393	0.85[EUR][1000 genomes]
rs824394	0.85[EUR][1000 genomes]
rs850830	0.92[ASN][1000 genomes]
rs860349	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs861113	0.85[EUR][1000 genomes]
rs865415	0.85[EUR][1000 genomes]
rs865416	0.85[EUR][1000 genomes]
rs940741	0.85[EUR][1000 genomes]
rs9767041	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64133400-64144600	Weak transcription	Fetal Intestine Small	intestine
2	chr6:64139800-64145200	Enhancers	HepG2	liver
3	chr6:64140200-64144800	Weak transcription	A549	lung
4	chr6:64143200-64144600	Weak transcription	Fetal Intestine Large	intestine

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