Variant report

Variant	rs824602
Chromosome Location	chr10:25699193-25699194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25696513..25699328-chr10:25708282..25709933,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10741085	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10764548	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs10764553	0.80[ASN][1000 genomes]
rs10828776	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10828800	0.82[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs11014552	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1329258	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1329267	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1329268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs1334057	0.83[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1341961	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1341962	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1341967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1361633	0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1410928	0.85[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1410935	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1413396	0.92[CEU][hapmap];0.89[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes]
rs1413398	0.83[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1418126	0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1418129	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1576319	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1612726	0.82[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.90[ASN][1000 genomes]
rs1754246	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1754248	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.90[ASN][1000 genomes]
rs1754252	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1754259	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1754263	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1754266	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1754270	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1754276	0.87[ASN][1000 genomes]
rs1754277	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1754281	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs1760750	0.85[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap]
rs1760757	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs1773604	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1773611	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1773615	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1773624	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1773631	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1773654	0.85[CEU][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1773655	0.88[ASN][1000 genomes]
rs1773656	0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1773657	0.90[ASN][1000 genomes]
rs1773658	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.90[ASN][1000 genomes]
rs1773659	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1773663	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1773678	0.88[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs1773681	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap]
rs1773682	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs1773688	0.91[ASN][1000 genomes]
rs1854471	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1855462	0.85[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap]
rs2480351	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs3949311	0.88[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs4271295	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4405201	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4749022	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs539357	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs545905	0.84[CHB][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap]
rs564371	0.85[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap]
rs577382	0.85[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap]
rs7072189	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081326	0.90[ASN][1000 genomes]
rs7097708	0.90[ASN][1000 genomes]
rs7392687	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs768540	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7924230	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs824591	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs824594	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs824596	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs824601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs956085	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs956086	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs956088	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs961027	0.84[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25698200-25699400	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links