Variant report

Variant	rs824604
Chromosome Location	chr10:25700114-25700115
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10764553	0.80[ASN][1000 genomes]
rs1334057	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1341967	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1361633	0.90[ASN][1000 genomes]
rs1410928	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1410935	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1413396	0.84[EUR][1000 genomes]
rs1413398	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1418126	0.90[ASN][1000 genomes]
rs1576319	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1612726	0.90[ASN][1000 genomes]
rs1754248	0.90[ASN][1000 genomes]
rs1754252	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1754259	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1754263	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1754266	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1754270	0.87[ASN][1000 genomes]
rs1754276	0.87[ASN][1000 genomes]
rs1754277	0.91[ASN][1000 genomes]
rs1773604	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1773611	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1773615	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1773654	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1773655	0.88[ASN][1000 genomes]
rs1773656	0.90[ASN][1000 genomes]
rs1773657	0.90[ASN][1000 genomes]
rs1773658	0.90[ASN][1000 genomes]
rs1773659	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1773688	0.91[ASN][1000 genomes]
rs7072189	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081326	0.90[ASN][1000 genomes]
rs7097708	0.90[ASN][1000 genomes]
rs7924230	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs824591	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs824594	0.88[ASN][1000 genomes]
rs824596	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs824601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25699400-25701400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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