Variant report

Variant	rs826836
Chromosome Location	chr12:39185406-39185407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10444549	0.87[AFR][1000 genomes]
rs10876062	0.87[CEU][hapmap]
rs10876185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1095571	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11837377	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12422883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12424244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12425783	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12427196	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12578804	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs12580606	0.81[CHB][hapmap]
rs17126226	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs17126713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56989350	1.00[ASN][1000 genomes]
rs57950648	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58235891	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59843534	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60409162	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60863548	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61636003	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7138835	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7297083	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs73084040	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73084043	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73084050	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73084066	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73084068	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73089536	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73089563	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73089574	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7309194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7315047	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7953319	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7954044	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs826837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826842	0.80[JPT][hapmap]
rs851931	1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9943730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469356	chr12:38242029-39187408	Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv558574	chr12:38242029-39187408	Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv676	chr12:39184359-39215822	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39153800-39188600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr12:39169400-39186600	Weak transcription	Hela-S3	cervix
3	chr12:39177400-39188600	Weak transcription	Lung	lung
4	chr12:39180200-39188600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr12:39182600-39202800	Weak transcription	Liver	Liver
6	chr12:39184200-39186400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr12:39184200-39205800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:39185400-39185800	Enhancers	NHEK	skin

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