Variant report

Variant	rs834439
Chromosome Location	chr7:137259346-137259347
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137257761..137259526-chr7:137266620..137268825,2	K562	blood:

Variant related genes	Relation type
ENSG00000157680	Chromatin interaction

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10081252	0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10226970	0.82[ASN][1000 genomes]
rs10229086	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10232182	0.82[ASN][1000 genomes]
rs10233537	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10234462	0.82[ASN][1000 genomes]
rs10236148	1.00[CEU][hapmap]
rs10237704	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10237813	1.00[CEU][hapmap]
rs10238276	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10238305	1.00[JPT][hapmap]
rs10242081	0.82[ASN][1000 genomes]
rs10242488	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10242747	0.82[ASN][1000 genomes]
rs10245413	0.83[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10246829	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10246952	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10252668	1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10254089	1.00[CEU][hapmap]
rs10255388	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10255937	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10260958	0.82[ASN][1000 genomes]
rs10261618	1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10262297	1.00[CEU][hapmap]
rs10264172	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10264413	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10267688	0.88[ASN][1000 genomes]
rs10268521	0.82[ASN][1000 genomes]
rs10271043	0.83[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10273321	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10274366	0.88[ASN][1000 genomes]
rs10274702	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10276067	1.00[CEU][hapmap]
rs10276225	1.00[CEU][hapmap]
rs10277872	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10279489	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10280229	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10281244	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10480524	1.00[CEU][hapmap]
rs1528101	1.00[CEU][hapmap]
rs17169223	1.00[CEU][hapmap]
rs17169237	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs17169284	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17169298	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17169313	1.00[JPT][hapmap]
rs17169324	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1723108	0.92[EUR][1000 genomes]
rs1728450	1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1728451	0.85[EUR][1000 genomes]
rs1728453	1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17372605	1.00[CEU][hapmap]
rs28451058	1.00[ASN][1000 genomes]
rs28521198	0.82[ASN][1000 genomes]
rs28572056	0.82[ASN][1000 genomes]
rs28683654	0.82[ASN][1000 genomes]
rs28736349	0.82[ASN][1000 genomes]
rs28755996	0.82[ASN][1000 genomes]
rs28758372	0.82[ASN][1000 genomes]
rs3800605	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3800609	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3800610	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3800611	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3823545	0.82[ASN][1000 genomes]
rs3823547	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs57226761	0.88[ASN][1000 genomes]
rs58048755	0.82[ASN][1000 genomes]
rs59024585	0.82[ASN][1000 genomes]
rs6467710	1.00[CEU][hapmap]
rs6945142	0.82[ASN][1000 genomes]
rs6945473	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6949210	1.00[ASN][1000 genomes]
rs6949568	1.00[ASN][1000 genomes]
rs6969227	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6969358	1.00[ASN][1000 genomes]
rs697596	0.83[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.82[ASN][1000 genomes]
rs6977097	1.00[CEU][hapmap]
rs706560	1.00[JPT][hapmap]
rs706561	0.83[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs706562	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs706567	0.83[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs706568	0.83[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs73449424	0.82[ASN][1000 genomes]
rs73449434	0.82[ASN][1000 genomes]
rs73449444	0.82[ASN][1000 genomes]
rs73451467	0.82[ASN][1000 genomes]
rs73453511	0.82[ASN][1000 genomes]
rs73453584	0.82[ASN][1000 genomes]
rs73453598	0.82[ASN][1000 genomes]
rs73728732	0.88[ASN][1000 genomes]
rs7781327	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7781490	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7787693	1.00[CEU][hapmap]
rs7800321	1.00[JPT][hapmap]
rs834069	1.00[JPT][hapmap]
rs834093	1.00[CEU][hapmap]
rs834099	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs834100	0.83[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];1.00[ASN][1000 genomes]
rs834433	0.83[ASW][hapmap]
rs834435	0.82[AFR][1000 genomes]
rs834436	0.94[ASW][hapmap];0.85[LWK][hapmap];0.86[MKK][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes]
rs834438	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs834441	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs834442	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs834443	0.96[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs834444	1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs834446	0.98[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs834447	1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs863082	1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137215400-137275400	Weak transcription	Brain Angular Gyrus	brain
2	chr7:137224400-137274800	Weak transcription	HSMMtube	muscle
3	chr7:137224800-137262400	Weak transcription	HSMM	muscle
4	chr7:137237200-137264000	Weak transcription	NH-A	brain
5	chr7:137237400-137277800	Weak transcription	Aorta	Aorta
6	chr7:137249400-137262800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:137249800-137265000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:137251000-137264600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:137253400-137261600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:137255000-137274800	Weak transcription	Brain Anterior Caudate	brain
11	chr7:137256200-137261400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:137256200-137261800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr7:137257200-137259600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:137257400-137264400	Weak transcription	NHDF-Ad	bronchial
15	chr7:137257600-137262400	Weak transcription	Osteobl	bone
16	chr7:137257600-137262600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:137257600-137264400	Weak transcription	Fetal Heart	heart

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