Variant report

Variant	rs836966
Chromosome Location	chr12:50269745-50269746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:50261492..50264871-chr12:50267070..50272951,8	MCF-7	breast:
2	chr12:50269088..50271373-chr12:50274652..50276581,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs417644	0.93[EUR][1000 genomes]
rs422022	0.93[EUR][1000 genomes]
rs608233	0.83[EUR][1000 genomes]
rs611282	0.85[EUR][1000 genomes]
rs612674	0.83[EUR][1000 genomes]
rs836964	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs836965	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs863226	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045327	chr12:49975040-50551375	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	170 gene(s)	inside rSNPs	diseases
2	nsv541490	chr12:49975040-50551375	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	170 gene(s)	inside rSNPs	diseases
3	nsv522972	chr12:50196394-50410831	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv530671	chr12:50233858-50708991	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
5	nsv832407	chr12:50243268-50412236	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	esv3372497	chr12:50269585-50276583	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:50262000-50270800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:50263600-50270800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:50263800-50271800	Weak transcription	Pancreas	Pancrea
4	chr12:50264600-50271600	Weak transcription	Fetal Brain Male	brain
5	chr12:50266200-50270000	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr12:50266200-50275400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:50266800-50271400	Weak transcription	Fetal Brain Female	brain
8	chr12:50267000-50275800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr12:50267000-50297000	Weak transcription	Right Atrium	heart
10	chr12:50268200-50276400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr12:50268600-50270800	Weak transcription	Brain Germinal Matrix	brain
12	chr12:50268600-50271400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr12:50268800-50271600	Weak transcription	Fetal Kidney	kidney
14	chr12:50269000-50270400	Strong transcription	Brain Cingulate Gyrus	brain
15	chr12:50269000-50274800	Strong transcription	Brain Inferior Temporal Lobe	brain
16	chr12:50269200-50269800	Weak transcription	Brain Hippocampus Middle	brain
17	chr12:50269200-50271400	Weak transcription	Brain Anterior Caudate	brain
18	chr12:50269200-50271400	Weak transcription	K562	blood
19	chr12:50269200-50271600	Weak transcription	Brain Substantia Nigra	brain
20	chr12:50269200-50273200	Strong transcription	Brain Angular Gyrus	brain
21	chr12:50269200-50274600	Weak transcription	Fetal Muscle Leg	muscle
22	chr12:50269400-50275400	Weak transcription	Fetal Stomach	stomach

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